Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6K89_RS13015 Genome accession   NZ_CP069851
Coordinates   2726347..2727165 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain FDAARGOS_1359     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2721347..2732165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K89_RS12980 (I6K89_12980) - 2721930..2722059 (-) 130 Protein_2550 hypothetical protein -
  I6K89_RS12985 (I6K89_12985) rpoZ 2722098..2722376 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  I6K89_RS12990 (I6K89_12990) gmk 2722449..2723078 (-) 630 WP_000015937.1 guanylate kinase -
  I6K89_RS12995 (I6K89_12995) ispH 2723201..2724151 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6K89_RS13000 (I6K89_13000) fimU 2724321..2724794 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6K89_RS13005 (I6K89_13005) pilV 2724788..2725348 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  I6K89_RS13010 (I6K89_13010) pilW 2725349..2726350 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  I6K89_RS13015 (I6K89_13015) pilX 2726347..2727165 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6K89_RS13020 (I6K89_13020) pilY1 2727177..2731031 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  I6K89_RS13025 (I6K89_13025) pilY2 2731044..2731526 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  I6K89_RS13030 (I6K89_13030) pilE 2731523..2731948 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=537077 I6K89_RS13015 WP_000149374.1 2726347..2727165(+) (pilX) [Acinetobacter baumannii strain FDAARGOS_1359]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=537077 I6K89_RS13015 WP_000149374.1 2726347..2727165(+) (pilX) [Acinetobacter baumannii strain FDAARGOS_1359]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993