Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LIO34_RS00385 Genome accession   NZ_CP085085
Coordinates   67404..67994 (+) Length   196 a.a.
NCBI ID   WP_004194470.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 62404..72994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO34_RS00375 - 63787..65310 (+) 1524 WP_004194221.1 Heme/copper-type cytochrome/quinol oxidase subunit 1 -
  LIO34_RS00380 hexB 65428..67365 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  LIO34_RS00385 ruvA 67404..67994 (+) 591 WP_004194470.1 Holliday junction branch migration protein RuvA Machinery gene
  LIO34_RS00390 - 68248..68817 (+) 570 WP_004194469.1 DNA-3-methyladenine glycosylase I -
  LIO34_RS00395 cinA 68854..70035 (+) 1182 WP_172005886.1 competence/damage-inducible protein A Machinery gene
  LIO34_RS00400 recA 70087..71238 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  LIO34_RS00405 spx 71474..71872 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  LIO34_RS00410 - 71972..72238 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  LIO34_RS00415 ruvX 72238..72657 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  LIO34_RS00420 - 72669..72989 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21725.08 Da        Isoelectric Point: 5.0727

>NTDB_id=537071 LIO34_RS00385 WP_004194470.1 67404..67994(+) (ruvA) [Streptococcus suis strain Ssuis_MA8]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=537071 LIO34_RS00385 WP_004194470.1 67404..67994(+) (ruvA) [Streptococcus suis strain Ssuis_MA8]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACACAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCATACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403