Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LIO20_RS22390 Genome accession   NZ_CP085082
Coordinates   4844088..4845530 (-) Length   480 a.a.
NCBI ID   WP_003123272.1    Uniprot ID   Q9HW85
Organism   Pseudomonas aeruginosa strain PAO1-Holloway     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4839088..4850530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO20_RS22360 (LIO20_22320) - 4839414..4840529 (+) 1116 WP_003101181.1 glycosyltransferase family 1 protein -
  LIO20_RS22365 (LIO20_22325) - 4840522..4841283 (+) 762 WP_003112786.1 DUF2334 domain-containing protein -
  LIO20_RS22370 (LIO20_22330) - 4841280..4842281 (+) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LIO20_RS22375 (LIO20_22335) - 4842256..4842468 (-) 213 WP_003115238.1 hypothetical protein -
  LIO20_RS22380 (LIO20_22340) purU 4842518..4843369 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  LIO20_RS22385 (LIO20_22345) mvaT 4843629..4844003 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  LIO20_RS22390 (LIO20_22350) sbcB 4844088..4845530 (-) 1443 WP_003123272.1 exodeoxyribonuclease I Machinery gene
  LIO20_RS22395 (LIO20_22355) - 4845755..4846492 (+) 738 WP_003101171.1 hypothetical protein -
  LIO20_RS22400 (LIO20_22360) - 4846530..4847327 (+) 798 WP_003123273.1 RDD family protein -
  LIO20_RS22405 (LIO20_22365) - 4847324..4848304 (+) 981 WP_003112783.1 stage II sporulation protein M -
  LIO20_RS22410 (LIO20_22370) - 4848291..4849862 (+) 1572 WP_003112782.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55449.70 Da        Isoelectric Point: 5.4134

>NTDB_id=537026 LIO20_RS22390 WP_003123272.1 4844088..4845530(-) (sbcB) [Pseudomonas aeruginosa strain PAO1-Holloway]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=537026 LIO20_RS22390 WP_003123272.1 4844088..4845530(-) (sbcB) [Pseudomonas aeruginosa strain PAO1-Holloway]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGATGAGTGCCAGCAAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTTCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACACTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HW85

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438