Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LIO20_RS16300 Genome accession   NZ_CP085082
Coordinates   3523973..3524302 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain PAO1-Holloway     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3518973..3529302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO20_RS16285 (LIO20_16250) uvrB 3520360..3522372 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  LIO20_RS16290 (LIO20_16255) - 3522560..3523756 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  LIO20_RS16300 (LIO20_16265) comEA/comE1 3523973..3524302 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  LIO20_RS16305 (LIO20_16270) - 3524493..3526490 (-) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  LIO20_RS16310 (LIO20_16275) - 3527055..3528162 (-) 1108 Protein_3223 IS3 family transposase -
  LIO20_RS16315 (LIO20_16280) - 3528240..3529259 (-) 1020 WP_003113413.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=537014 LIO20_RS16300 WP_003104586.1 3523973..3524302(-) (comEA/comE1) [Pseudomonas aeruginosa strain PAO1-Holloway]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=537014 LIO20_RS16300 WP_003104586.1 3523973..3524302(-) (comEA/comE1) [Pseudomonas aeruginosa strain PAO1-Holloway]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385