Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LIO20_RS01910 Genome accession   NZ_CP085082
Coordinates   417306..418673 (+) Length   455 a.a.
NCBI ID   WP_003128930.1    Uniprot ID   Q9I6C1
Organism   Pseudomonas aeruginosa strain PAO1-Holloway     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412306..423673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO20_RS01890 (LIO20_01890) - 413143..413709 (-) 567 WP_003084491.1 hypothetical protein -
  LIO20_RS01895 (LIO20_01895) rsmD 413712..414308 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LIO20_RS01900 (LIO20_01900) - 414308..415795 (-) 1488 WP_003112971.1 pitrilysin family protein -
  LIO20_RS01905 (LIO20_01905) - 415788..417185 (-) 1398 WP_010895504.1 pitrilysin family protein -
  LIO20_RS01910 (LIO20_01910) pilA 417306..418673 (+) 1368 WP_003128930.1 signal recognition particle-docking protein FtsY Machinery gene
  LIO20_RS01915 (LIO20_01915) ftsE 418670..419341 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LIO20_RS01920 (LIO20_01920) ftsX 419341..420348 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  LIO20_RS01925 (LIO20_01925) rpoH 420462..421316 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  LIO20_RS01930 (LIO20_01930) - 421381..421986 (+) 606 WP_003084511.1 hypothetical protein -
  LIO20_RS01935 (LIO20_01935) mtgA 421991..422722 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LIO20_RS01940 (LIO20_01940) - 422759..423136 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  LIO20_RS01945 (LIO20_01945) thiS 423239..423439 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48391.82 Da        Isoelectric Point: 4.5272

>NTDB_id=536969 LIO20_RS01910 WP_003128930.1 417306..418673(+) (pilA) [Pseudomonas aeruginosa strain PAO1-Holloway]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKT
SASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQP
LQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVI
FDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLA
LTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=536969 LIO20_RS01910 WP_003128930.1 417306..418673(+) (pilA) [Pseudomonas aeruginosa strain PAO1-Holloway]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGCCCCGAGGCGCCCGTCGCACA
ACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGC
TGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACC
AGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGA
GACGCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCA
AGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCG
TTGCAGGTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGG
CAAGCTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGG
AGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATC
TTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGA
CAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGG
TGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCC
CTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATAT
CGGTGTCGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGA
ACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(250-449)

SRP54-type protein, helical bundle domain (SRP54_N)

(165-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I6C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.911

96.044

0.451