Detailed information NTG0536906

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: I6K98_RS12690
• Genome accession: NZ_CP069820
• Coordinates: 2658608..2659711 (-)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis strain FDAARGOS_1368
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2653608..2664711

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K98_RS12660 (I6K98_12660)	-	2653646..2654596 (+)	951	WP_005013747.1	IS481-like element IS481 family transposase	-
I6K98_RS12665 (I6K98_12665)	-	2654590..2655075 (+)	486	Protein_2503	phosphonate ABC transporter ATP-binding protein	-
I6K98_RS12670 (I6K98_12670)	phnE	2655093..2655962 (+)	870	WP_023998122.1	phosphonate ABC transporter, permease protein PhnE	-
I6K98_RS12675 (I6K98_12675)	phnE	2655959..2656780 (+)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
I6K98_RS12685 (I6K98_12685)	-	2656963..2658561 (+)	1599	Protein_2506	CYTH and CHAD domain-containing protein	-
I6K98_RS12690 (I6K98_12690)	pilA	2658608..2659711 (-)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
I6K98_RS12695 (I6K98_12695)	rsmD	2659787..2660407 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
I6K98_RS12700 (I6K98_12700)	coaD	2660428..2660937 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
I6K98_RS12705 (I6K98_12705)	-	2660992..2661243 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
I6K98_RS12710 (I6K98_12710)	-	2661307..2662440 (+)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
I6K98_RS12715 (I6K98_12715)	-	2662448..2662834 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=536906 I6K98_RS12690 WP_023853086.1 2658608..2659711(-) (pilA) [Bordetella pertussis strain FDAARGOS_1368]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=536906 I6K98_RS12690 WP_023853086.1 2658608..2659711(-) (pilA) [Bordetella pertussis strain FDAARGOS_1368]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507