Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G9395_RS17790 Genome accession   NZ_CP069815
Coordinates   3750339..3750962 (-) Length   207 a.a.
NCBI ID   WP_032688494.1    Uniprot ID   A0A2X2DYW5
Organism   Raoultella planticola strain HH15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3745339..3755962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9395_RS17775 (G9395_017775) helD 3745575..3747629 (-) 2055 WP_064793888.1 DNA helicase IV -
  G9395_RS17780 (G9395_017780) - 3747752..3748198 (+) 447 WP_004860167.1 YccF domain-containing protein -
  G9395_RS17785 (G9395_017785) yccS 3748216..3750351 (+) 2136 WP_032700361.1 YccS family putative transporter -
  G9395_RS17790 (G9395_017790) sxy/tfoX 3750339..3750962 (-) 624 WP_032688494.1 TfoX/Sxy family DNA transformation protein Regulator
  G9395_RS17795 (G9395_017795) sulA 3751422..3751931 (+) 510 WP_032688495.1 SOS-induced cell division inhibitor SulA -
  G9395_RS17800 (G9395_017800) ompA 3752284..3753354 (+) 1071 WP_032688496.1 porin OmpA -
  G9395_RS17805 (G9395_017805) matP 3753460..3753912 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  G9395_RS17810 (G9395_017810) - 3754098..3755855 (+) 1758 WP_032688497.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23308.02 Da        Isoelectric Point: 9.7117

>NTDB_id=536889 G9395_RS17790 WP_032688494.1 3750339..3750962(-) (sxy/tfoX) [Raoultella planticola strain HH15]
MKKMSSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKRLQHASGRLKDLPNISFHMELLLINAGVSDEKMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWAGSQHKNIDLYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=536889 G9395_RS17790 WP_032688494.1 3750339..3750962(-) (sxy/tfoX) [Raoultella planticola strain HH15]
ATGAAGAAAATGTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGCGGCTACAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTCGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCCACTCCACTCTTGACGATGCGAAAAAATGGTCGCCCGGTCTTACTGAAA
TATTATCAGGTTGACGAGACCCTCTGGGGTGATAGTAAAACGCTTTTCAATCTGTCGGCGTCCTCATTACAAAGTGCACG
CAATGAAAAGCGTCTACAGCATGCGTCCGGAAGATTAAAAGATCTCCCGAATATCAGTTTTCATATGGAGCTGCTGTTGA
TTAACGCAGGCGTGAGCGATGAAAAAATGCTCCGTCAGTTTGGTGCGGAGAAAGTCTGGTTGAAATTGCGGGAATCAAAC
AAAGCACTCACGTTGAATGTTCTCTATGCGCTGGAAGGGGCTATTGCCGGAGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTATGGGCCGGCAGCCAGCACAAAAATATCGATCTTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X2DYW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498