Detailed information NTG0536868

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: JTE92_RS22250
• Genome accession: NZ_CP069812
• Coordinates: 2138351..2139712 (-)
• Length: 453 a.a.
• NCBI ID: WP_063237918.1
• Uniprot ID: -
• Organism: Cupriavidus oxalaticus strain Ox1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2133351..2144712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JTE92_RS22235 (JTE92_22235)	-	2134292..2135275 (-)	984	WP_063237915.1	MurR/RpiR family transcriptional regulator	-
JTE92_RS22240 (JTE92_22240)	-	2135580..2137511 (+)	1932	WP_063237916.1	ATP-binding cassette domain-containing protein	-
JTE92_RS22245 (JTE92_22245)	-	2137688..2138173 (-)	486	WP_063237917.1	disulfide bond formation protein B	-
JTE92_RS22250 (JTE92_22250)	radA	2138351..2139712 (-)	1362	WP_063237918.1	DNA repair protein RadA	Machinery gene
JTE92_RS22255 (JTE92_22255)	alr	2139813..2140934 (-)	1122	WP_063237919.1	alanine racemase	-
JTE92_RS22260 (JTE92_22260)	lplT	2141538..2142857 (+)	1320	WP_063237920.1	lysophospholipid transporter LplT	-
JTE92_RS22265 (JTE92_22265)	-	2142892..2144037 (-)	1146	WP_063237921.1	DUF1853 family protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48260.57 Da
• Isoelectric Point: 7.2389

>NTDB_id=536868 JTE92_RS22250 WP_063237918.1 2138351..2139712(-) (radA) [Cupriavidus oxalaticus strain Ox1]
MAKTKTVYTCTECGGTAPRWAGQCPHCQQWNTLVETVAETAASKRFQPLAASATVRKLSEIDAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPALGLLAEIQLEKIQATLEA
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVAGSCVLVTQEGTRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTLAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide

• Length: 1362 bp

>NTDB_id=536868 JTE92_RS22250 WP_063237918.1 2138351..2139712(-) (radA) [Cupriavidus oxalaticus strain Ox1]
TTGGCCAAGACCAAGACCGTCTACACCTGTACCGAATGCGGCGGCACCGCGCCGCGCTGGGCCGGCCAGTGCCCGCACTG
CCAGCAATGGAACACGCTGGTGGAAACGGTGGCCGAGACGGCCGCGTCCAAGCGCTTCCAGCCGCTGGCGGCATCGGCCA
CGGTGCGCAAGCTGTCGGAGATCGACGCGGCCGACGTGCCGCGCTTTTCCAGCGGCATCGACGAGTTCGACCGCGTGCTG
GGCGGCGGCCTGGTGTCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCCAACCTGGCCGGGCAGCGCCGCGTGCTCTATGTCAGCGGCGAAGAATCGGGCGCGCAGATCGCCCTGCGCGCGC
AGCGGCTCGGCGTGGAAAGCCCGGCGCTGGGGCTGCTCGCCGAAATCCAGCTCGAGAAGATCCAGGCCACGCTCGAAGCC
GAGAAGCCGGAAGTGGCGGTGATCGACTCGATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTCGGTCGC
GCAGGTGCGCGAATGCGCCGCGCAGCTGACGCGCATCGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTGGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGATACGCAT
TCTTCGCACCGGCTGATCCGTGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGACCGAGCG
CGGGCTGCGCGGCATCAGCAACCCGTCGGCACTGTTCCTGTCGCAGCATGAAGAGACCGTGGCCGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACACCGCCCACGTGCCCAACCCGCGCCGG
CTGGCGGTGGGACTGGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCATGCGGGCATTGCCTGCTTCGA
CCAGGATGTGTTCCTGAACGCGGTGGGCGGGGTCAAGATCACGGAGCCGGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTGTTTGGCGAAGTCGGCCTGGCCGGCGAGATCCGGCCC
AGCCCGCGCGGACAGGAGCGGTTGAAGGAGGCCGCCAAGCTGGGCTTCACGCTGGCTGTGATTCCCAAGGCCAACGCGCC
CAAGCAGAAGATCGATGGCCTTGAAGTGATCGCGGTGGAGCGCATCGAGCAGGCCATCGATCGCGTGCGGCATCTGGATT
GA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (63-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.106	99.779	0.51
radA	Streptococcus pneumoniae Rx1	46.813	100	0.47
radA	Streptococcus pneumoniae D39	46.813	100	0.47
radA	Streptococcus pneumoniae R6	46.813	100	0.47
radA	Streptococcus pneumoniae TIGR4	46.813	100	0.47
radA	Streptococcus mitis SK321	46.916	100	0.47
radA	Streptococcus mitis NCTC 12261	46.593	100	0.468