Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JTE91_RS20010 Genome accession   NZ_CP069810
Coordinates   1646930..1648291 (+) Length   453 a.a.
NCBI ID   WP_063237918.1    Uniprot ID   -
Organism   Cupriavidus oxalaticus strain Ox1_mCherry     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641930..1653291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTE91_RS19995 (JTE91_19995) - 1642605..1643750 (+) 1146 WP_063237921.1 DUF1853 family protein -
  JTE91_RS20000 (JTE91_20000) lplT 1643785..1645104 (-) 1320 WP_063237920.1 lysophospholipid transporter LplT -
  JTE91_RS20005 (JTE91_20005) alr 1645708..1646829 (+) 1122 WP_063237919.1 alanine racemase -
  JTE91_RS20010 (JTE91_20010) radA 1646930..1648291 (+) 1362 WP_063237918.1 DNA repair protein RadA Machinery gene
  JTE91_RS20015 (JTE91_20015) - 1648469..1648954 (+) 486 WP_063237917.1 disulfide bond formation protein B -
  JTE91_RS20020 (JTE91_20020) - 1649131..1651062 (-) 1932 WP_063237916.1 ATP-binding cassette domain-containing protein -
  JTE91_RS20025 (JTE91_20025) - 1651367..1652350 (+) 984 WP_063237915.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48260.57 Da        Isoelectric Point: 7.2389

>NTDB_id=536846 JTE91_RS20010 WP_063237918.1 1646930..1648291(+) (radA) [Cupriavidus oxalaticus strain Ox1_mCherry]
MAKTKTVYTCTECGGTAPRWAGQCPHCQQWNTLVETVAETAASKRFQPLAASATVRKLSEIDAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPALGLLAEIQLEKIQATLEA
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVAGSCVLVTQEGTRPLLVEIQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQERLKEAAKLGFTLAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=536846 JTE91_RS20010 WP_063237918.1 1646930..1648291(+) (radA) [Cupriavidus oxalaticus strain Ox1_mCherry]
TTGGCCAAGACCAAGACCGTCTACACCTGTACCGAATGCGGCGGCACCGCGCCGCGCTGGGCCGGCCAGTGCCCGCACTG
CCAGCAATGGAACACGCTGGTGGAAACGGTGGCCGAGACGGCCGCGTCCAAGCGCTTCCAGCCGCTGGCGGCATCGGCCA
CGGTGCGCAAGCTGTCGGAGATCGACGCGGCCGACGTGCCGCGCTTTTCCAGCGGCATCGACGAGTTCGACCGCGTGCTG
GGCGGCGGCCTGGTGTCGGGCGGCGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCCAACCTGGCCGGGCAGCGCCGCGTGCTCTATGTCAGCGGCGAAGAATCGGGCGCGCAGATCGCCCTGCGCGCGC
AGCGGCTCGGCGTGGAAAGCCCGGCGCTGGGGCTGCTCGCCGAAATCCAGCTCGAGAAGATCCAGGCCACGCTCGAAGCC
GAGAAGCCGGAAGTGGCGGTGATCGACTCGATCCAGACGCTGTACTCGGAGGCGCTGACCTCGGCGCCGGGCTCGGTCGC
GCAGGTGCGCGAATGCGCCGCGCAGCTGACGCGCATCGCCAAGAGCAGCGGCATCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAAGGCAGCCTGGCCGGCCCGCGCGTGCTGGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGATACGCAT
TCTTCGCACCGGCTGATCCGTGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCCATGACCGAGCG
CGGGCTGCGCGGCATCAGCAACCCGTCGGCACTGTTCCTGTCGCAGCATGAAGAGACCGTGGCCGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACACCGCCCACGTGCCCAACCCGCGCCGG
CTGGCGGTGGGACTGGAGCAGAACCGGCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCATGCGGGCATTGCCTGCTTCGA
CCAGGATGTGTTCCTGAACGCGGTGGGCGGGGTCAAGATCACGGAGCCGGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTGTTTGGCGAAGTCGGCCTGGCCGGCGAGATCCGGCCC
AGCCCGCGCGGACAGGAGCGGTTGAAGGAGGCCGCCAAGCTGGGCTTCACGCTGGCTGTGATTCCCAAGGCCAACGCGCC
CAAGCAGAAGATCGATGGCCTTGAAGTGATCGCGGTGGAGCGCATCGAGCAGGCCATCGATCGCGTGCGGCATCTGGATT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.106

99.779

0.51
  radA Streptococcus pneumoniae Rx1

46.813

100

0.47
  radA Streptococcus pneumoniae D39

46.813

100

0.47
  radA Streptococcus pneumoniae R6

46.813

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.813

100

0.47
  radA Streptococcus mitis SK321

46.916

100

0.47
  radA Streptococcus mitis NCTC 12261

46.593

100

0.468