Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JQN59_RS14810 Genome accession   NZ_CP069801
Coordinates   3084785..3085399 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter sp. B72     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3079785..3090399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN59_RS14795 (JQN59_14795) helD 3080009..3082063 (-) 2055 WP_048214504.1 DNA helicase IV -
  JQN59_RS14800 (JQN59_14800) - 3082189..3082635 (+) 447 WP_003831998.1 YccF domain-containing protein -
  JQN59_RS14805 (JQN59_14805) yccS 3082654..3084807 (+) 2154 WP_149607838.1 YccS family putative transporter -
  JQN59_RS14810 (JQN59_14810) sxy/tfoX 3084785..3085399 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  JQN59_RS14815 (JQN59_14815) sulA 3085617..3086126 (+) 510 WP_149607839.1 SOS-induced cell division inhibitor SulA -
  JQN59_RS14820 (JQN59_14820) ompA 3086484..3087542 (+) 1059 WP_079934917.1 porin OmpA -
  JQN59_RS14825 (JQN59_14825) matP 3087631..3088083 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  JQN59_RS14830 (JQN59_14830) - 3088269..3090029 (+) 1761 WP_111465810.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=536822 JQN59_RS14810 WP_003831996.1 3084785..3085399(-) (sxy/tfoX) [Citrobacter sp. B72]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=536822 JQN59_RS14810 WP_003831996.1 3084785..3085399(-) (sxy/tfoX) [Citrobacter sp. B72]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGAGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCTCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTAGGCAAAATAAT
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676