Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JQU52_RS08030 Genome accession   NZ_CP069798
Coordinates   1537092..1538462 (+) Length   456 a.a.
NCBI ID   WP_230338000.1    Uniprot ID   -
Organism   Paralysiella testudinis strain 26B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1532092..1543462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS07995 (JQU52_08005) - 1533488..1534357 (-) 870 WP_230337995.1 pirin family protein -
  JQU52_RS08000 (JQU52_08010) - 1534420..1534671 (-) 252 WP_230337996.1 DUF896 domain-containing protein -
  JQU52_RS08005 (JQU52_08015) - 1534817..1535197 (+) 381 WP_230337997.1 helix-turn-helix domain-containing protein -
  JQU52_RS08010 (JQU52_08020) - 1535284..1535463 (-) 180 WP_230337998.1 hypothetical protein -
  JQU52_RS08015 (JQU52_08025) - 1535512..1536719 (-) 1208 Protein_1561 IS3 family transposase -
  JQU52_RS08030 (JQU52_08035) radA 1537092..1538462 (+) 1371 WP_230338000.1 DNA repair protein RadA Machinery gene
  JQU52_RS08035 (JQU52_08040) - 1538509..1539177 (+) 669 WP_230338001.1 class I SAM-dependent methyltransferase -
  JQU52_RS08040 (JQU52_08045) - 1539189..1539839 (+) 651 WP_230338002.1 fumarylacetoacetate hydrolase family protein -
  JQU52_RS08045 (JQU52_08050) - 1540095..1540928 (+) 834 WP_230338003.1 transporter substrate-binding domain-containing protein -
  JQU52_RS08050 (JQU52_08055) - 1541043..1541759 (+) 717 WP_230338004.1 amino acid ABC transporter permease -
  JQU52_RS08055 (JQU52_08060) - 1541770..1542516 (+) 747 WP_230338005.1 amino acid ABC transporter ATP-binding protein -
  JQU52_RS08060 (JQU52_08065) - 1542595..1542909 (+) 315 WP_230338006.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48518.91 Da        Isoelectric Point: 7.4206

>NTDB_id=536753 JQU52_RS08030 WP_230338000.1 1537092..1538462(+) (radA) [Paralysiella testudinis strain 26B]
MAKSKTQYQCSECGGTTPKWQGKCPHCGEWNTLVEAAALPEPASGRFQSWAAEAGQVQSLAQVSATEVPRNPTGMSELDR
VLGGGLVDGAVILLGGDPGIGKSTLLLQTVALMAQNRRVLYVSGEESAQQVALRAQRLGLASEGVNLLAEIRMEAIAAVL
KQHQPAVVVIDSIQTMYADAITSAPGSVSQVRECAAQLTRMAKQLGIAIILVGHVTKDGAIAGPRVLEHMVDTVLYFEGD
QHSNYRMIRAMKNRFGAANELGVFAMTDKGLKGVANPSAIFLSSYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFAP
KRLTVGLAQDRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKITEPAADLAVILAMLSSHRNRPLPQKMVAFGEIGLSGEV
RPVTRGQERLKEAEKLGFTHAIVPQANLPRHAADFPKLKITGVSSLQQAVDACREG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=536753 JQU52_RS08030 WP_230338000.1 1537092..1538462(+) (radA) [Paralysiella testudinis strain 26B]
ATGGCCAAAAGCAAAACCCAATACCAGTGCAGTGAATGCGGCGGCACCACGCCCAAGTGGCAAGGTAAATGTCCGCATTG
CGGCGAATGGAATACATTGGTGGAAGCGGCGGCGCTGCCTGAGCCTGCCAGTGGGCGTTTTCAATCGTGGGCGGCAGAGG
CCGGGCAGGTGCAGAGCTTGGCGCAAGTAAGCGCCACCGAGGTGCCGCGCAACCCCACCGGCATGAGTGAGCTGGATCGG
GTATTGGGCGGCGGCTTGGTGGATGGTGCGGTGATTTTGCTTGGCGGCGACCCCGGCATTGGCAAGTCTACTTTATTGCT
GCAAACCGTGGCGCTGATGGCGCAAAACCGCCGTGTGCTGTATGTGTCGGGCGAGGAATCGGCACAGCAAGTGGCTTTGC
GCGCGCAACGGCTGGGGCTGGCTTCCGAGGGCGTTAATCTGCTGGCGGAAATCCGCATGGAAGCGATTGCGGCGGTTTTA
AAACAGCATCAGCCGGCGGTGGTGGTGATTGATTCCATCCAAACCATGTATGCCGACGCGATTACGTCGGCGCCCGGCTC
GGTATCGCAAGTGCGTGAATGCGCGGCACAGCTCACGCGCATGGCCAAGCAATTGGGCATTGCCATTATTTTGGTGGGGC
ATGTTACCAAAGACGGCGCCATTGCCGGCCCGCGCGTGCTGGAGCATATGGTGGACACGGTGCTGTATTTCGAGGGCGAC
CAACACTCCAACTACCGCATGATTCGGGCGATGAAAAACCGCTTTGGTGCCGCCAACGAGCTGGGCGTGTTTGCGATGAC
CGACAAAGGCTTAAAAGGCGTGGCCAATCCGTCGGCGATTTTTTTGTCCAGCTACCGTGACGACGTGCCCGGCTCGTGCG
TGCTGGTAACCCAAGAAGGCTCGCGCCCTTTGCTGGTGGAAATTCAGGCGCTGGTGGACGATGCCCACGGCTTTGCCCCC
AAACGCCTCACCGTGGGGCTGGCACAAGACCGGCTGGCGATGTTGCTGGCGGTGCTCAACCGCCATGCCGGCATTGCCTG
CTTCGACCAAGATGTGTTTTTAAATGCCGTGGGCGGGGTGAAAATCACCGAACCGGCGGCCGATTTGGCGGTGATACTGG
CCATGCTGTCGAGCCACCGCAACCGCCCGCTGCCTCAAAAAATGGTGGCCTTCGGCGAAATCGGCCTGTCCGGTGAAGTG
CGCCCGGTAACGCGCGGACAAGAACGCTTAAAAGAAGCGGAGAAGCTCGGTTTTACCCACGCCATCGTGCCGCAAGCCAA
CCTGCCGCGCCACGCTGCCGATTTTCCCAAGCTGAAAATCACTGGTGTGTCGTCTTTGCAGCAGGCGGTGGATGCGTGCC
GGGAAGGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

99.561

0.482
  radA Streptococcus pneumoniae Rx1

47.672

98.904

0.471
  radA Streptococcus pneumoniae D39

47.672

98.904

0.471
  radA Streptococcus pneumoniae TIGR4

47.672

98.904

0.471
  radA Streptococcus pneumoniae R6

47.672

98.904

0.471
  radA Streptococcus mitis NCTC 12261

47.45

98.904

0.469
  radA Streptococcus mitis SK321

47.333

98.684

0.467