Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LH370_RS00570 Genome accession   NZ_CP085063
Coordinates   112804..114231 (-) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain P31_YH1_02.21     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107804..119231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH370_RS00540 (LH370_00540) yeeZ 107859..108683 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  LH370_RS00545 (LH370_00545) yeeY 108729..109658 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  LH370_RS00550 (LH370_00550) yoeI 109873..109935 (+) 63 WP_010723108.1 membrane protein YoeI -
  LH370_RS00555 (LH370_00555) plaP 109925..111283 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LH370_RS00560 (LH370_00560) tsuA 111462..112520 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  LH370_RS00565 (LH370_00565) tsuB 112534..112761 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LH370_RS00570 (LH370_00570) sbcB 112804..114231 (-) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  LH370_RS00575 (LH370_00575) dacD 114440..115606 (+) 1167 WP_021523140.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LH370_RS00580 (LH370_00580) sbmC 115725..116198 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  LH370_RS00585 (LH370_00585) yeeA 116396..117454 (+) 1059 WP_001200890.1 FUSC family protein -
  LH370_RS00590 (LH370_00590) tmaR 117626..117955 (+) 330 WP_000450409.1 DUF496 family protein -
  LH370_RS00595 (LH370_00595) - 118056..118238 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  LH370_RS00600 (LH370_00600) - 118301..118438 (+) 138 Protein_119 transposase domain-containing protein -
  LH370_RS00605 (LH370_00605) - 118727..118819 (-) 93 Protein_120 DUF957 domain-containing protein -
  LH370_RS00610 (LH370_00610) yeeW 118853..119047 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=536717 LH370_RS00570 WP_021523141.1 112804..114231(-) (sbcB) [Escherichia coli strain P31_YH1_02.21]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=536717 LH370_RS00570 WP_021523141.1 112804..114231(-) (sbcB) [Escherichia coli strain P31_YH1_02.21]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581