Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   D1098_RS00440 Genome accession   NZ_CP069797
Coordinates   90112..90405 (+) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain K17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 85112..95405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1098_RS00420 (D1098_00420) rsmI 86290..87144 (+) 855 WP_009874917.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D1098_RS00425 (D1098_00425) - 87188..87757 (-) 570 WP_005601959.1 elongation factor P hydroxylase -
  D1098_RS00430 (D1098_00430) - 87815..89566 (-) 1752 WP_005601957.1 protein-disulfide reductase DsbD -
  D1098_RS00435 (D1098_00435) - 89760..90131 (+) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  D1098_RS00440 (D1098_00440) HI0659 90112..90405 (+) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  D1098_RS00445 (D1098_00445) - 90483..91445 (-) 963 WP_005619672.1 calcium/sodium antiporter -
  D1098_RS00450 (D1098_00450) - 91518..92015 (+) 498 WP_005601953.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  D1098_RS00455 (D1098_00455) artP 92240..92974 (+) 735 WP_005612838.1 arginine ABC transporter ATP-binding protein ArtP -
  D1098_RS00460 (D1098_00460) - 92994..93713 (+) 720 WP_011848574.1 transporter substrate-binding domain-containing protein -
  D1098_RS00465 (D1098_00465) artQ 93719..94390 (+) 672 WP_011848573.1 arginine ABC transporter permease ArtQ -
  D1098_RS00470 (D1098_00470) artM 94390..95073 (+) 684 WP_005605188.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=536708 D1098_RS00440 WP_005598477.1 90112..90405(+) (HI0659) [Actinobacillus pleuropneumoniae strain K17]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=536708 D1098_RS00440 WP_005598477.1 90112..90405(+) (HI0659) [Actinobacillus pleuropneumoniae strain K17]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGACTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATTTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619