Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D1099_RS09720 Genome accession   NZ_CP069796
Coordinates   2011826..2012980 (-) Length   384 a.a.
NCBI ID   WP_005602519.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 6 str. Femo     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2006826..2017980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1099_RS09700 (D1099_09675) secE 2007202..2007615 (-) 414 WP_005599209.1 preprotein translocase subunit SecE -
  D1099_RS09705 (D1099_09680) - 2007918..2008190 (+) 273 WP_005599206.1 PTS sugar transporter subunit IIB -
  D1099_RS09710 (D1099_09685) - 2008199..2009554 (+) 1356 WP_005599204.1 PTS ascorbate transporter subunit IIC -
  D1099_RS09715 (D1099_09690) - 2009776..2011782 (+) 2007 WP_043992102.1 OPT family oligopeptide transporter -
  D1099_RS09720 (D1099_09695) dprA 2011826..2012980 (-) 1155 WP_005602519.1 DNA-processing protein DprA Machinery gene
  D1099_RS09725 (D1099_09700) def 2013166..2013678 (+) 513 WP_005599196.1 peptide deformylase -
  D1099_RS09730 (D1099_09705) rfaD 2013818..2014744 (+) 927 WP_005599195.1 ADP-glyceromanno-heptose 6-epimerase -
  D1099_RS09735 (D1099_09710) - 2014804..2015973 (-) 1170 Protein_1882 surface lipoprotein assembly modifier -
  D1099_RS09740 - 2015989..2016210 (-) 222 WP_237611501.1 hypothetical protein -
  D1099_RS09745 (D1099_09715) - 2016357..2016791 (-) 435 WP_005609137.1 factor H binding protein domain-containing protein -
  D1099_RS09750 (D1099_09720) - 2016825..2017013 (+) 189 WP_005599189.1 hypothetical protein -
  D1099_RS09755 (D1099_09725) - 2017137..2017751 (-) 615 WP_005609135.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42857.09 Da        Isoelectric Point: 5.2415

>NTDB_id=536702 D1099_RS09720 WP_005602519.1 2011826..2012980(-) (dprA) [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
MSQADLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIDNALTWAERPNQHLLSLFD
EEYPFLLRQISIAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFSEQLVKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPWQQALFEPPQAVENAQFFTKADVPNKVN
HLAKKLPELTDCQQQIVAHISLEPISIDDLAKATALEVDTLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=536702 D1099_RS09720 WP_005602519.1 2011826..2012980(-) (dprA) [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
ATGTCTCAGGCTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGCCAATTACAACAAATTGGTTGGAACGAGAAACAGATTCAACGCTGGT
TCAATCCGGAAATGCGTTGGATTGATAATGCTCTCACGTGGGCGGAGCGGCCGAATCAACACTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGTATCGCACCGCCGGTGTTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTAGCGAGCAAT
TGGTTAAACATCATTTGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAAAATTTCCCTCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACGTTAGTGGTGGAAGCCACATTAAATAGCGGTTCGCTGATTACCGCTCGTTAT
GCGTTGGAACAAGGGCGAGAAGTGTTTGCGTTACCCAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTTTTAACCGAAACGATAGAGGATATTTTACAGGCAATTCAATATCAACTGCCGGATCAGCCTTGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGTTGAAAACGCACAATTTTTTACAAAAGCAGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAATTGACCGATTGTCAGCAACAAATTGTGGCGCATATTAGTCTTGAACCGATTTCGAT
TGACGATTTGGCGAAAGCGACCGCATTGGAAGTGGATACACTATTGGTTGAATTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTAAGCGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.406

98.698

0.734
  dprA Vibrio campbellii strain DS40M4

46.719

99.219

0.464
  dprA Haemophilus influenzae Rd KW20

49.28

90.365

0.445
  dprA Vibrio cholerae strain A1552

41.86

100

0.422
  dprA Legionella pneumophila strain ERS1305867

37.337

99.74

0.372