Detailed information NTG0536632

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LH369_RS00300
• Genome accession: NZ_CP085060
• Coordinates: 50216..51241 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain P30_L1_05.20
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 45216..56241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LH369_RS00270 (LH369_00270)	zapB	45300..45545 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
LH369_RS00275 (LH369_00275)	rraA	45630..46115 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LH369_RS00280 (LH369_00280)	menA	46208..47134 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LH369_RS00285 (LH369_00285)	hslU	47201..48532 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LH369_RS00290 (LH369_00290)	hslV	48542..49072 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LH369_RS00295 (LH369_00295)	ftsN	49165..50124 (-)	960	WP_000068828.1	cell division protein FtsN	-
LH369_RS00300 (LH369_00300)	cytR	50216..51241 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LH369_RS00305 (LH369_00305)	priA	51397..53595 (-)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
LH369_RS00310 (LH369_00310)	rpmE	53798..54010 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
LH369_RS00315 (LH369_00315)	yiiX	54071..54679 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LH369_RS00320 (LH369_00320)	metJ	54863..55180 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=536632 LH369_RS00300 WP_000644904.1 50216..51241(-) (cytR) [Escherichia coli strain P30_L1_05.20]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=536632 LH369_RS00300 WP_000644904.1 50216..51241(-) (cytR) [Escherichia coli strain P30_L1_05.20]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628