Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JR441_RS14135 Genome accession   NZ_CP069789
Coordinates   2730978..2731724 (-) Length   248 a.a.
NCBI ID   WP_088467305.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725978..2736724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS14110 (JR441_14110) mreC 2726384..2727256 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  JR441_RS14115 (JR441_14115) mreB 2727287..2728300 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  JR441_RS14120 (JR441_14120) radC 2728392..2729087 (-) 696 WP_014480455.1 DNA repair protein RadC -
  JR441_RS14125 (JR441_14125) maf 2729124..2729693 (-) 570 WP_088467303.1 Maf family nucleotide pyrophosphatase -
  JR441_RS14130 (JR441_14130) spoIIB 2729846..2730844 (-) 999 WP_088467304.1 stage II sporulation protein SpoIIB -
  JR441_RS14135 (JR441_14135) comC 2730978..2731724 (-) 747 WP_088467305.1 A24 family peptidase Machinery gene
  JR441_RS14140 (JR441_14140) folC 2731864..2733156 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  JR441_RS14145 (JR441_14145) valS 2733216..2735858 (-) 2643 WP_085187377.1 valine--tRNA ligase -
  JR441_RS14150 (JR441_14150) - 2736306..2736497 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26455.05 Da        Isoelectric Point: 9.7944

>NTDB_id=536631 JR441_RS14135 WP_088467305.1 2730978..2731724(-) (comC) [Bacillus subtilis strain BIM B-569G]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=536631 JR441_RS14135 WP_088467305.1 2730978..2731724(-) (comC) [Bacillus subtilis strain BIM B-569G]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992