Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JR441_RS12880 Genome accession   NZ_CP069789
Coordinates   2515432..2515842 (-) Length   136 a.a.
NCBI ID   WP_198878615.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2510432..2520842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS12850 (JR441_12850) - 2510519..2510659 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  JR441_RS12855 (JR441_12855) yqeF 2510965..2511696 (-) 732 WP_029317882.1 SGNH/GDSL hydrolase family protein -
  JR441_RS12860 (JR441_12860) cwlH 2511948..2512700 (-) 753 WP_128993171.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  JR441_RS12865 (JR441_12865) yqeD 2512887..2513513 (+) 627 WP_038429330.1 TVP38/TMEM64 family protein -
  JR441_RS12870 (JR441_12870) gnd 2513532..2514425 (-) 894 WP_038429331.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  JR441_RS12875 (JR441_12875) yqeB 2514677..2515399 (+) 723 WP_010886572.1 hypothetical protein -
  JR441_RS12880 (JR441_12880) nucA/comI 2515432..2515842 (-) 411 WP_198878615.1 sporulation-specific Dnase NucB Machinery gene
  JR441_RS12885 (JR441_12885) - 2516038..2516385 (+) 348 Protein_2505 sigma-70 family RNA polymerase sigma factor -
  JR441_RS12890 (JR441_12890) spoIVCA 2516416..2517876 (-) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  JR441_RS21045 - 2517834..2518012 (-) 179 Protein_2507 hypothetical protein -
  JR441_RS12895 (JR441_12895) arsC 2518367..2518786 (-) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  JR441_RS12900 (JR441_12900) acr3 2518798..2519838 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  JR441_RS12905 (JR441_12905) arsK 2519861..2520301 (-) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  JR441_RS12910 (JR441_12910) arsR 2520362..2520679 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14968.92 Da        Isoelectric Point: 5.1853

>NTDB_id=536627 JR441_RS12880 WP_198878615.1 2515432..2515842(-) (nucA/comI) [Bacillus subtilis strain BIM B-569G]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFNVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=536627 JR441_RS12880 WP_198878615.1 2515432..2515842(-) (nucA/comI) [Bacillus subtilis strain BIM B-569G]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAGCAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACG
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCTGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
ATGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529