Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JR441_RS12630 Genome accession   NZ_CP069789
Coordinates   2471992..2472759 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain BIM B-569G     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2466992..2477759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS12610 (JR441_12610) ppsR 2467166..2467978 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  JR441_RS12615 (JR441_12615) ccpN 2468004..2468642 (-) 639 WP_198878622.1 transcriptional regulator CcpN -
  JR441_RS12620 (JR441_12620) glyS 2468775..2470814 (-) 2040 WP_198878621.1 glycine--tRNA ligase subunit beta -
  JR441_RS12625 (JR441_12625) glyQ 2470807..2471694 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  JR441_RS12630 (JR441_12630) recO 2471992..2472759 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  JR441_RS12635 (JR441_12635) yqzL 2472796..2472939 (-) 144 WP_003230053.1 YqzL family protein -
  JR441_RS12640 (JR441_12640) era 2473087..2473992 (-) 906 WP_003230051.1 GTPase Era -
  JR441_RS12645 (JR441_12645) - 2473973..2474383 (-) 411 WP_032722130.1 cytidine deaminase -
  JR441_RS12650 (JR441_12650) unpK 2474502..2474873 (-) 372 WP_080529555.1 diacylglycerol kinase family protein -
  JR441_RS12655 (JR441_12655) ybeY 2474854..2475327 (-) 474 WP_128993163.1 rRNA maturation RNase YbeY -
  JR441_RS12660 (JR441_12660) pgpH 2475328..2477463 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=536623 JR441_RS12630 WP_003230055.1 2471992..2472759(-) (recO) [Bacillus subtilis strain BIM B-569G]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=536623 JR441_RS12630 WP_003230055.1 2471992..2472759(-) (recO) [Bacillus subtilis strain BIM B-569G]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1