Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IUB69_RS05995 Genome accession   NZ_ABACVG020000001
Coordinates   1256771..1257508 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2020CK-00188     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251771..1262508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUB69_RS05980 (IUB69_005960) clpC 1252225..1254798 (-) 2574 WP_002431841.1 ATP-dependent chaperone ClpB Regulator
  IUB69_RS05985 (IUB69_005965) yfiH 1254928..1255659 (-) 732 WP_032184934.1 purine nucleoside phosphorylase YfiH -
  IUB69_RS05990 (IUB69_005970) rluD 1255656..1256636 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IUB69_RS05995 (IUB69_005975) comL 1256771..1257508 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IUB69_RS06000 (IUB69_005980) - 1257631..1258342 (+) 712 Protein_1178 IS4 family transposase -
  IUB69_RS06005 (IUB69_005985) raiA 1258602..1258943 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IUB69_RS06010 (IUB69_005990) pheL 1259047..1259094 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IUB69_RS06015 (IUB69_005995) pheA 1259193..1260353 (+) 1161 WP_032184936.1 bifunctional chorismate mutase/prephenate dehydratase -
  IUB69_RS06020 (IUB69_006000) tyrA 1260396..1261517 (-) 1122 WP_000225210.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=53662 IUB69_RS05995 WP_000197686.1 1256771..1257508(+) (comL) [Escherichia coli strain 2020CK-00188]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=53662 IUB69_RS05995 WP_000197686.1 1256771..1257508(+) (comL) [Escherichia coli strain 2020CK-00188]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAGGTAGCGAAGATTATCGCTGCT
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment