Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JR441_RS12100 Genome accession   NZ_CP069789
Coordinates   2382109..2382912 (-) Length   267 a.a.
NCBI ID   WP_128441713.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2377109..2387912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS12075 (JR441_12075) glpQB 2378246..2378977 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  JR441_RS12080 (JR441_12080) yqiI 2379056..2379676 (-) 621 WP_198878642.1 N-acetylmuramoyl-L-alanine amidase -
  JR441_RS12085 (JR441_12085) - 2379696..2379992 (-) 297 WP_014480225.1 hypothetical protein -
  JR441_RS12090 (JR441_12090) - 2380300..2380452 (+) 153 WP_014480226.1 hypothetical protein -
  JR441_RS12095 (JR441_12095) yqiG 2380525..2381643 (+) 1119 WP_198878641.1 NADH-dependent flavin oxidoreductase -
  JR441_RS12100 (JR441_12100) spo0A 2382109..2382912 (-) 804 WP_128441713.1 sporulation transcription factor Spo0A Regulator
  JR441_RS12105 (JR441_12105) spoIVB 2383188..2384468 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  JR441_RS12110 (JR441_12110) recN 2384643..2386373 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  JR441_RS12115 (JR441_12115) argR 2386410..2386859 (-) 450 WP_003230265.1 arginine repressor ArgR -
  JR441_RS12120 (JR441_12120) yqxC 2386957..2387802 (-) 846 WP_128441715.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29718.21 Da        Isoelectric Point: 6.3913

>NTDB_id=536612 JR441_RS12100 WP_128441713.1 2382109..2382912(-) (spo0A) [Bacillus subtilis strain BIM B-569G]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRNSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=536612 JR441_RS12100 WP_128441713.1 2382109..2382912(-) (spo0A) [Bacillus subtilis strain BIM B-569G]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAACAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTTCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996