Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JR441_RS11105 Genome accession   NZ_CP069789
Coordinates   2204819..2205439 (+) Length   206 a.a.
NCBI ID   WP_088467249.1    Uniprot ID   -
Organism   Bacillus subtilis strain BIM B-569G     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2199819..2210439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS11065 (JR441_11065) ptsA 2200950..2201456 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  JR441_RS11070 (JR441_11070) ypqA 2201594..2202013 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  JR441_RS11075 (JR441_11075) sppG 2202034..2202411 (-) 378 WP_014477159.1 YppG family protein -
  JR441_RS11080 (JR441_11080) yppF 2202599..2202787 (+) 189 WP_003230690.1 YppF family protein -
  JR441_RS11085 (JR441_11085) yppE 2202826..2203197 (-) 372 WP_015714151.1 YppE family protein -
  JR441_RS11090 (JR441_11090) yppD 2203243..2203488 (-) 246 WP_015251831.1 YppD family protein -
  JR441_RS11095 (JR441_11095) sspM 2203687..2203791 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  JR441_RS11100 (JR441_11100) yppC 2203816..2204778 (-) 963 WP_198878669.1 DUF2515 domain-containing protein -
  JR441_RS11105 (JR441_11105) recU 2204819..2205439 (+) 621 WP_088467249.1 Holliday junction resolvase RecU Machinery gene
  JR441_RS11110 (JR441_11110) ponA 2205461..2208211 (+) 2751 WP_198878668.1 PBP1A family penicillin-binding protein -
  JR441_RS11115 (JR441_11115) ypoC 2208287..2208781 (-) 495 WP_029726783.1 YpoC family protein -
  JR441_RS11120 (JR441_11120) nth 2208778..2209437 (-) 660 WP_009967580.1 endonuclease III -
  JR441_RS11125 (JR441_11125) dnaD 2209456..2210154 (-) 699 WP_198878667.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23986.11 Da        Isoelectric Point: 9.6240

>NTDB_id=536611 JR441_RS11105 WP_088467249.1 2204819..2205439(+) (recU) [Bacillus subtilis strain BIM B-569G]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYINIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=536611 JR441_RS11105 WP_088467249.1 2204819..2205439(+) (recU) [Bacillus subtilis strain BIM B-569G]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAATATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995