Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JR441_RS07905 Genome accession   NZ_CP069789
Coordinates   1507143..1507421 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain BIM B-569G     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502143..1512421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS07885 (JR441_07885) panEB 1503333..1504244 (+) 912 WP_198878756.1 ketopantoate reductase family protein -
  JR441_RS07890 (JR441_07890) ampS 1504276..1505508 (-) 1233 WP_003232341.1 aminopeptidase -
  JR441_RS07895 (JR441_07895) ykpC 1505617..1505751 (-) 135 WP_003238865.1 protein YkpC -
  JR441_RS07900 (JR441_07900) mreBH 1505852..1506859 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  JR441_RS07905 (JR441_07905) abrB 1507143..1507421 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  JR441_RS07910 (JR441_07910) kinC 1507611..1508897 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  JR441_RS07915 (JR441_07915) ykqA 1508913..1509740 (+) 828 WP_160221551.1 gamma-glutamylcyclotransferase -
  JR441_RS07920 (JR441_07920) ktrC 1509803..1510468 (+) 666 WP_204551493.1 TrkA family potassium uptake protein -
  JR441_RS07925 (JR441_07925) ade 1510624..1512357 (+) 1734 WP_160221552.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=536606 JR441_RS07905 WP_003244728.1 1507143..1507421(+) (abrB) [Bacillus subtilis strain BIM B-569G]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=536606 JR441_RS07905 WP_003244728.1 1507143..1507421(+) (abrB) [Bacillus subtilis strain BIM B-569G]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576