Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JR441_RS00245 Genome accession   NZ_CP069789
Coordinates   44687..44977 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain BIM B-569G     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39687..49977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR441_RS00205 (JR441_00205) darA 39710..40039 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  JR441_RS00210 (JR441_00210) yaaR 40052..40492 (+) 441 WP_009966249.1 YaaR family protein -
  JR441_RS00215 (JR441_00215) holB 40504..41493 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  JR441_RS00220 (JR441_00220) ricT 41496..42323 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  JR441_RS00225 (JR441_00225) yabA 42338..42697 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  JR441_RS00230 (JR441_00230) trmNF 42756..43499 (+) 744 WP_198879161.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JR441_RS00235 (JR441_00235) yazA 43486..43785 (+) 300 WP_014475567.1 GIY-YIG nuclease family protein -
  JR441_RS00240 (JR441_00240) rsmI 43760..44638 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JR441_RS00245 (JR441_00245) abrB 44687..44977 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  JR441_RS00250 (JR441_00250) metG 45471..47465 (+) 1995 WP_014662479.1 methionine--tRNA ligase -
  JR441_RS00255 (JR441_00255) dayD 47545..48312 (+) 768 WP_029726393.1 TatD family hydrolase -
  JR441_RS00260 (JR441_00260) yabE 48468..49781 (+) 1314 WP_029726392.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=536577 JR441_RS00245 WP_003226760.1 44687..44977(-) (abrB) [Bacillus subtilis strain BIM B-569G]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=536577 JR441_RS00245 WP_003226760.1 44687..44977(-) (abrB) [Bacillus subtilis strain BIM B-569G]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1