Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JSQ77_RS14355 Genome accession   NZ_CP069712
Coordinates   2951689..2952318 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EA13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2946689..2957318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSQ77_RS14340 (JSQ77_14345) helD 2946931..2948985 (-) 2055 WP_063856163.1 DNA helicase IV -
  JSQ77_RS14345 (JSQ77_14350) yccF 2949108..2949554 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JSQ77_RS14350 (JSQ77_14355) yccS 2949564..2951726 (+) 2163 WP_000875061.1 YccS family putative transporter -
  JSQ77_RS14355 (JSQ77_14360) sxy/tfoX 2951689..2952318 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JSQ77_RS14360 (JSQ77_14365) sulA 2952537..2953046 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  JSQ77_RS14365 (JSQ77_14370) ompA 2953403..2954455 (+) 1053 WP_032202393.1 porin OmpA -
  JSQ77_RS14370 (JSQ77_14375) matP 2954531..2954983 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JSQ77_RS14375 (JSQ77_14380) ycbZ 2955169..2956929 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=536559 JSQ77_RS14355 WP_000839153.1 2951689..2952318(-) (sxy/tfoX) [Escherichia coli strain EA13]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=536559 JSQ77_RS14355 WP_000839153.1 2951689..2952318(-) (sxy/tfoX) [Escherichia coli strain EA13]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1