Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LH706_RS12765 Genome accession   NZ_CP085043
Coordinates   2746140..2747183 (+) Length   347 a.a.
NCBI ID   WP_011000966.1    Uniprot ID   Q8Y0M9
Organism   Ralstonia pseudosolanacearum strain RS638     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2741140..2752183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH706_RS12745 (LH706_12760) iscR 2741529..2742110 (-) 582 WP_011000970.1 Fe-S cluster assembly transcriptional regulator IscR -
  LH706_RS12750 (LH706_12765) - 2742518..2743477 (+) 960 WP_016723281.1 sugar ABC transporter substrate-binding protein -
  LH706_RS12755 (LH706_12770) - 2743513..2745084 (+) 1572 WP_071014843.1 sugar ABC transporter ATP-binding protein -
  LH706_RS12760 (LH706_12775) - 2745074..2746120 (+) 1047 WP_020831548.1 ABC transporter permease -
  LH706_RS12765 (LH706_12780) cytR 2746140..2747183 (+) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator
  LH706_RS12770 (LH706_12785) rbsK 2747220..2748167 (+) 948 WP_011000965.1 ribokinase -
  LH706_RS12775 (LH706_12790) - 2748194..2750284 (-) 2091 WP_247393196.1 site-specific recombinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37288.37 Da        Isoelectric Point: 6.9310

>NTDB_id=536530 LH706_RS12765 WP_011000966.1 2746140..2747183(+) (cytR) [Ralstonia pseudosolanacearum strain RS638]
MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRTIGVLVPTATNPYFAELARG
IEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGLIVSSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDH
EEGAYLATRHLLELGHRRIACISGPSTLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLTTGETPTA
IFASNDLMGIGALRAAAELGIAVPKELSIIGFDDIELSRYVYPALSTVGQSIRQLGETTASTLLEHLTDHAARHHHEIPD
APRRIVLPPRLSLRESTAEPARPARAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=536530 LH706_RS12765 WP_011000966.1 2746140..2747183(+) (cytR) [Ralstonia pseudosolanacearum strain RS638]
ATGGCCACTATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATGTCATCAACAACACACGGCC
GGTCAACTCGGAAACGCGCAAGCGCGTGGAAGAGGCCATCCGCGCCACGCGCTATGTACCCAGCGCCGTAGCACGCTCGC
TCAAGCACCGCACCACGCGCACCATCGGCGTGCTGGTGCCGACCGCCACCAACCCCTACTTCGCCGAACTGGCGCGCGGC
ATCGAAGACGTGTGCGCCGCGGCCGGCTACAGCGTCATCCTGTGCAACTCCGATGACGACCCCCGCAAGCAGCGCGACTA
CCTGCGCGTGCTGATGGAGAAGCGCGTCGACGGCCTCATCGTCAGCAGCGCCGGACCGGACAACGCGCTGCTCGATGCAC
TGGGCGAATCCGCGCTGCCCGTGGTGATGGTGGACCGCCCCACCGAGGGCATCCTGGCCGACCAGGTGCAGATCGACCAT
GAGGAAGGCGCCTACCTGGCGACCCGGCATCTGCTCGAGCTCGGGCACCGCCGCATTGCCTGCATCAGCGGACCGTCGAC
GCTGAGCGTGACCGCCGGGCGGCTGGCGGGCTTTCACCGGGCGCTGCGCGAAGCCGGCGTGCCCGAGCACGCCGCGCGCG
TGGCCGAAGGCGACTTCACCAGCCCCGGCGGCTACCGCGCCGCGCGCGAACTGCTGACCACCGGCGAGACGCCCACCGCC
ATCTTCGCCAGCAACGACCTGATGGGCATCGGCGCGCTGCGTGCGGCCGCCGAGCTGGGCATCGCGGTGCCGAAGGAACT
GTCCATCATCGGCTTCGACGACATCGAGCTGAGCCGCTATGTCTATCCGGCGCTGTCCACGGTGGGCCAGTCGATCCGGC
AACTGGGCGAGACCACGGCCTCAACCCTGCTCGAGCACCTGACCGATCACGCCGCGCGGCATCACCACGAGATCCCCGAC
GCGCCGCGCCGCATCGTGCTGCCGCCGCGCCTGTCGCTGCGCGAGTCGACCGCCGAGCCCGCACGCCCCGCGCGCGCGGC
CTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.012

98.559

0.375
  cytR Vibrio parahaemolyticus RIMD 2210633

36.55

98.559

0.36