Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LH706_RS05210 Genome accession   NZ_CP085043
Coordinates   1103541..1104161 (-) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain RS638     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098541..1109161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH706_RS05180 (LH706_05190) - 1099043..1099801 (-) 759 WP_019718335.1 3-hydroxyacyl-CoA dehydrogenase -
  LH706_RS05185 (LH706_05195) adk 1099960..1100628 (-) 669 WP_011002448.1 adenylate kinase -
  LH706_RS05190 (LH706_05200) kdsB 1100948..1101754 (-) 807 WP_247393084.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LH706_RS05195 (LH706_05205) - 1101773..1101961 (-) 189 WP_003266270.1 Trm112 family protein -
  LH706_RS05200 (LH706_05210) lpxK 1102022..1103071 (-) 1050 WP_021155356.1 tetraacyldisaccharide 4'-kinase -
  LH706_RS05205 (LH706_05215) - 1103087..1103518 (-) 432 WP_011002445.1 biopolymer transporter ExbD -
  LH706_RS05210 (LH706_05220) exbB 1103541..1104161 (-) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LH706_RS05215 (LH706_05225) xseA 1105786..1107201 (+) 1416 WP_019718337.1 exodeoxyribonuclease VII large subunit -
  LH706_RS05220 (LH706_05230) sodB 1107347..1107925 (+) 579 WP_028853552.1 superoxide dismutase [Fe] -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=536509 LH706_RS05210 WP_011002444.1 1103541..1104161(-) (exbB) [Ralstonia pseudosolanacearum strain RS638]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=536509 LH706_RS05210 WP_011002444.1 1103541..1104161(-) (exbB) [Ralstonia pseudosolanacearum strain RS638]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCGGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGCCAGAACGTCGCTCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403