Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LH706_RS02230 Genome accession   NZ_CP085043
Coordinates   490478..491947 (+) Length   489 a.a.
NCBI ID   WP_028853775.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS638     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 485478..496947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH706_RS02215 (LH706_02230) - 486632..488152 (+) 1521 WP_089190554.1 aldehyde dehydrogenase family protein -
  LH706_RS02220 (LH706_02235) - 488236..489630 (+) 1395 WP_019718965.1 ethanolamine ammonia-lyase subunit EutB -
  LH706_RS02225 (LH706_02240) eutC 489639..490451 (+) 813 WP_011003016.1 ethanolamine ammonia-lyase subunit EutC -
  LH706_RS02230 (LH706_02245) sbcB 490478..491947 (+) 1470 WP_028853775.1 exodeoxyribonuclease I Machinery gene
  LH706_RS02235 (LH706_02250) - 492049..492543 (+) 495 WP_064478143.1 type VI secretion system amidase effector protein Tae4 -
  LH706_RS02240 (LH706_02255) - 492540..492962 (+) 423 WP_223259920.1 type VI secretion system amidase immunity protein Tai4 -
  LH706_RS02245 (LH706_02260) - 493121..493456 (+) 336 WP_139274372.1 hypothetical protein -
  LH706_RS02250 (LH706_02265) - 494027..494992 (-) 966 WP_016723619.1 IS5-like element IS1405 family transposase -
  LH706_RS02255 (LH706_02270) - 494989..496194 (-) 1206 WP_265069530.1 hypothetical protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 55672.72 Da        Isoelectric Point: 4.9918

>NTDB_id=536496 LH706_RS02230 WP_028853775.1 490478..491947(+) (sbcB) [Ralstonia pseudosolanacearum strain RS638]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGITPQQC
RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDAPRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLPEGTARLPVKSIHINKSPIVIGNLK
TLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLFRYRARNFPDTLTEDEHEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALY
DYAEMVTPE

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=536496 LH706_RS02230 WP_028853775.1 490478..491947(+) (sbcB) [Ralstonia pseudosolanacearum strain RS638]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGACGCCGAGCTCAACGAGATCGGCGAACCGGTCG
AGCTGTTCTGCCAGCCGTCCAACGACTGGCTGCCCGACCCGGTGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CGCCGGCAGGGTATCCCCGAGCACCGTTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTATAACTCCATCCGCTTCGACGATGAGATCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGATGGGATCTGCTCGATGTGGTGCGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGGCGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCACA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCGCCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGCGACGCGCCGCGGCCGTTGCTGCACGTCTCGGGCATG
TACGGCGTGGAGCGGGGCTGCCTGGCGGTAGTGTGGCCGCTGGGCTGGCACCCGACCAACAAGAACGAACTGCTGGTGTG
GGACCTCGCCTGCGATCCGGCCGAGCTGTTCGACCTCGGCGTTGACACCATCCGCGAGCGCCTGTTCACGCGCAGCGCGG
ACCTGCCCGAAGGCACCGCGCGCCTGCCCGTCAAGTCGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAG
ACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCATCGACTTCGCGGTCATCGAGCGTCATGCCGGTATCGCCCAAGGGGC
GCCCGATCTGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAGCTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAATGACGACCGCCGCACGCTCAACGAACTGCGCACGCTTTCGGGCGAGCAGCTCGCGCAGCTGCAC
CCCGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTCCGCTACCGCGCCCGCAATTTCCCCGACACGCTCACGGAAGA
CGAGCACGAGCAGTGGGAACAGCTGCGCGCCGAGCGTCTCTTCGAAGGCCGCGATGGCTACCTGACGCTGGATGCCTATG
CCGAGCGCATCGAGCAACTGGCGGCCGAGGCGGCGGATAAAGGCGATGCGCGTGCCGAAGGCATCCTCTCGGCGCTGTAC
GACTACGCTGAGATGGTGACGCCGGAGTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(19-199)

Exonuclease C-terminal (ExoI_SH3)

(218-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

47.468

96.933

0.46