Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | JSQ86_RS14985 | Genome accession | NZ_CP069707 |
| Coordinates | 3044519..3045148 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain E41 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3018740..3063937 | 3044519..3045148 | within | 0 |
Gene organization within MGE regions
Location: 3018740..3063937
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ86_RS14800 (JSQ86_14800) | - | 3019085..3019360 (-) | 276 | WP_123008118.1 | hypothetical protein | - |
| JSQ86_RS24360 | - | 3019334..3019456 (+) | 123 | WP_258742594.1 | hypothetical protein | - |
| JSQ86_RS14805 (JSQ86_14805) | - | 3019996..3020499 (-) | 504 | WP_251302273.1 | FkbM family methyltransferase | - |
| JSQ86_RS14810 (JSQ86_14810) | - | 3020411..3020902 (-) | 492 | WP_204098010.1 | FkbM family methyltransferase | - |
| JSQ86_RS14815 (JSQ86_14815) | hokD | 3021027..3021182 (-) | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JSQ86_RS14820 (JSQ86_14820) | - | 3021428..3021532 (-) | 105 | WP_001278454.1 | hypothetical protein | - |
| JSQ86_RS14825 (JSQ86_14825) | - | 3021666..3022646 (+) | 981 | WP_000019441.1 | IS5-like element ISKpn26 family transposase | - |
| JSQ86_RS24440 | - | 3022848..3023186 (-) | 339 | WP_000726005.1 | DUF551 domain-containing protein | - |
| JSQ86_RS24200 | - | 3023286..3023381 (-) | 96 | Protein_2935 | hypothetical protein | - |
| JSQ86_RS24205 | - | 3023592..3023717 (-) | 126 | Protein_2936 | hypothetical protein | - |
| JSQ86_RS14835 (JSQ86_14835) | - | 3023728..3023991 (-) | 264 | WP_000224233.1 | hypothetical protein | - |
| JSQ86_RS14840 (JSQ86_14840) | - | 3023993..3024210 (-) | 218 | Protein_2938 | DUF4014 family protein | - |
| JSQ86_RS14845 (JSQ86_14845) | - | 3024243..3024455 (-) | 213 | WP_000935421.1 | hypothetical protein | - |
| JSQ86_RS14850 (JSQ86_14850) | - | 3024506..3024862 (-) | 357 | WP_024249813.1 | hypothetical protein | - |
| JSQ86_RS14855 (JSQ86_14855) | - | 3024920..3025342 (-) | 423 | WP_001151130.1 | DUF977 family protein | - |
| JSQ86_RS14860 (JSQ86_14860) | - | 3025383..3026453 (-) | 1071 | WP_191642465.1 | phage replisome organizer | - |
| JSQ86_RS14865 (JSQ86_14865) | - | 3026525..3026950 (-) | 426 | WP_001678565.1 | toxin YdaT family protein | - |
| JSQ86_RS14870 (JSQ86_14870) | - | 3026947..3027249 (-) | 303 | WP_204098011.1 | transcriptional regulator | - |
| JSQ86_RS14875 (JSQ86_14875) | - | 3027347..3027718 (+) | 372 | WP_122985828.1 | hypothetical protein | - |
| JSQ86_RS14880 (JSQ86_14880) | - | 3027739..3027930 (+) | 192 | WP_001302048.1 | hypothetical protein | - |
| JSQ86_RS14885 (JSQ86_14885) | - | 3027932..3028210 (+) | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JSQ86_RS14890 (JSQ86_14890) | ydfA | 3028502..3028657 (+) | 156 | WP_032154077.1 | DUF1391 family protein | - |
| JSQ86_RS14895 (JSQ86_14895) | - | 3028798..3029424 (+) | 627 | WP_203373727.1 | hypothetical protein | - |
| JSQ86_RS14900 (JSQ86_14900) | - | 3029425..3029634 (-) | 210 | WP_033813301.1 | hypothetical protein | - |
| JSQ86_RS14905 (JSQ86_14905) | dicB | 3030202..3030390 (+) | 189 | WP_086625363.1 | cell division inhibition protein DicB | - |
| JSQ86_RS14910 (JSQ86_14910) | - | 3030387..3030590 (+) | 204 | WP_086625364.1 | DUF1482 family protein | - |
| JSQ86_RS14915 (JSQ86_14915) | - | 3030671..3033154 (+) | 2484 | WP_204098012.1 | exonuclease | - |
| JSQ86_RS14920 (JSQ86_14920) | - | 3033221..3033472 (+) | 252 | WP_000273167.1 | DUF4224 domain-containing protein | - |
| JSQ86_RS14925 (JSQ86_14925) | - | 3033441..3034460 (+) | 1020 | WP_001364438.1 | tyrosine-type recombinase/integrase | - |
| JSQ86_RS14930 (JSQ86_14930) | yccA | 3034868..3035527 (+) | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| JSQ86_RS14935 (JSQ86_14935) | tusE | 3035618..3035947 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| JSQ86_RS14940 (JSQ86_14940) | yccX | 3035944..3036222 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| JSQ86_RS14945 (JSQ86_14945) | rlmI | 3036317..3037507 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| JSQ86_RS14950 (JSQ86_14950) | hspQ | 3037565..3037882 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| JSQ86_RS14955 (JSQ86_14955) | yccU | 3037927..3038340 (-) | 414 | WP_001301418.1 | CoA-binding protein | - |
| JSQ86_RS14960 (JSQ86_14960) | yccT | 3038513..3039175 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| JSQ86_RS14965 (JSQ86_14965) | mgsA | 3039271..3039729 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| JSQ86_RS14970 (JSQ86_14970) | helD | 3039761..3041815 (-) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| JSQ86_RS14975 (JSQ86_14975) | yccF | 3041938..3042384 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| JSQ86_RS14980 (JSQ86_14980) | yccS | 3042394..3044556 (+) | 2163 | WP_000875061.1 | YccS family putative transporter | - |
| JSQ86_RS14985 (JSQ86_14985) | sxy/tfoX | 3044519..3045148 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| JSQ86_RS14990 (JSQ86_14990) | sulA | 3045367..3045876 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| JSQ86_RS14995 (JSQ86_14995) | ompA | 3046233..3047273 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| JSQ86_RS15000 (JSQ86_15000) | matP | 3047349..3047801 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| JSQ86_RS15005 (JSQ86_15005) | ycbZ | 3047987..3049747 (+) | 1761 | WP_000156518.1 | Lon protease family protein | - |
| JSQ86_RS15010 (JSQ86_15010) | fabA | 3049816..3050334 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| JSQ86_RS15015 (JSQ86_15015) | rmf | 3050404..3050571 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| JSQ86_RS15020 (JSQ86_15020) | pqiC | 3050827..3051390 (-) | 564 | WP_000759120.1 | membrane integrity-associated transporter subunit PqiC | - |
| JSQ86_RS15025 (JSQ86_15025) | pqiB | 3051387..3053027 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| JSQ86_RS15030 (JSQ86_15030) | pqiA | 3053032..3054285 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| JSQ86_RS15035 (JSQ86_15035) | uup | 3054415..3056322 (-) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| JSQ86_RS15040 (JSQ86_15040) | rlmKL | 3056334..3058442 (-) | 2109 | WP_204098013.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| JSQ86_RS15045 (JSQ86_15045) | ycbX | 3058686..3059795 (+) | 1110 | WP_000212426.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| JSQ86_RS15050 (JSQ86_15050) | zapC | 3059792..3060334 (-) | 543 | WP_001338438.1 | cell division protein ZapC | - |
| JSQ86_RS15055 (JSQ86_15055) | pyrD | 3060508..3061518 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| JSQ86_RS15060 (JSQ86_15060) | ycbF | 3061629..3062366 (-) | 738 | WP_001111465.1 | fimbrial chaperone | - |
| JSQ86_RS15065 (JSQ86_15065) | ycbV | 3062332..3062847 (-) | 516 | WP_000919497.1 | fimbrial protein | - |
| JSQ86_RS15070 (JSQ86_15070) | ycbU | 3062855..3063397 (-) | 543 | WP_000730614.1 | fimbrial protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=536493 JSQ86_RS14985 WP_000839153.1 3044519..3045148(-) (sxy/tfoX) [Escherichia coli strain E41]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=536493 JSQ86_RS14985 WP_000839153.1 3044519..3045148(-) (sxy/tfoX) [Escherichia coli strain E41]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |