Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LH646_RS09125 Genome accession   NZ_CP085039
Coordinates   2028985..2029770 (-) Length   261 a.a.
NCBI ID   WP_003951282.1    Uniprot ID   A0ABR4S5N7
Organism   Streptomyces sp. WA1-19     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2023985..2034770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH646_RS09115 (LH646_09115) - 2024961..2026823 (+) 1863 WP_030698767.1 IucA/IucC family protein -
  LH646_RS09120 (LH646_09120) - 2026910..2028898 (+) 1989 WP_030698768.1 ATP-dependent DNA helicase -
  LH646_RS09125 (LH646_09125) dinR/lexA 2028985..2029770 (-) 786 WP_003951282.1 transcriptional repressor LexA Regulator
  LH646_RS09130 (LH646_09130) nrdR 2030390..2030902 (+) 513 WP_047471463.1 transcriptional regulator NrdR -
  LH646_RS09135 (LH646_09135) - 2031049..2033919 (+) 2871 WP_030698770.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28190.95 Da        Isoelectric Point: 8.9090

>NTDB_id=536447 LH646_RS09125 WP_003951282.1 2028985..2029770(-) (dinR/lexA) [Streptomyces sp. WA1-19]
MTTTADSATITAQGRSQGRRESVHAMNEPASPQEGAKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPADTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=536447 LH646_RS09125 WP_003951282.1 2028985..2029770(-) (dinR/lexA) [Streptomyces sp. WA1-19]
GTGACCACGACCGCAGACAGCGCCACCATCACCGCCCAGGGCCGGTCCCAGGGACGACGGGAGTCGGTGCACGCCATGAA
TGAGCCCGCCTCGCCCCAGGAGGGAGCGAAGCCCGCCCGCTCGCTCCCCGGACGACCTCCGGGCATCCGCGCGGACAGCT
CAGGACTGACCGACCGGCAGCGCCGCGTGATCGAGGTCATCCGCGACTCGGTGCAGCGTCGCGGCTACCCGCCGTCGATG
CGGGAGATCGGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTGGCCCACCAGCTGATGGCCCTGGAGCGCAAGGGCTT
CCTCCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCGAGCGCGCAGCCCGCGGACACCA
CTGGCAAGCCCGCCGCCTCCTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGCGGGCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCCCTCCCCCGCCAGCTGGTCGGCGACGGTGAGCTCTTCGTCCTCAAGGTCGTCGGTGACTCCATGAT
CGAGGCGGCCATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCCACCGTGAAGCGGTTCAAGCGCGAGGACAACCACATCTGGCTCCTCCCGCACAACGCGGCCTAC
CAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTCCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379