Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LH646_RS05945 Genome accession   NZ_CP085039
Coordinates   1294473..1295453 (+) Length   326 a.a.
NCBI ID   WP_226964373.1    Uniprot ID   -
Organism   Streptomyces sp. WA1-19     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289473..1300453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH646_RS05925 (LH646_05925) - 1289481..1290629 (+) 1149 WP_030695777.1 ABC transporter ATP-binding protein -
  LH646_RS05930 (LH646_05930) - 1290834..1292465 (+) 1632 WP_195730406.1 peptide ABC transporter substrate-binding protein -
  LH646_RS05935 (LH646_05935) - 1292557..1293480 (+) 924 WP_151168193.1 ABC transporter permease -
  LH646_RS05940 (LH646_05940) - 1293473..1294459 (+) 987 WP_030695774.1 ABC transporter permease -
  LH646_RS05945 (LH646_05945) amiE 1294473..1295453 (+) 981 WP_226964373.1 ABC transporter ATP-binding protein Regulator
  LH646_RS05950 (LH646_05950) - 1295440..1296645 (+) 1206 WP_030695772.1 ABC transporter ATP-binding protein -
  LH646_RS05955 (LH646_05955) - 1297043..1298041 (+) 999 WP_047467412.1 hypothetical protein -
  LH646_RS05960 (LH646_05960) - 1298038..1300179 (-) 2142 WP_151168191.1 S9 family peptidase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35932.56 Da        Isoelectric Point: 6.5008

>NTDB_id=536435 LH646_RS05945 WP_226964373.1 1294473..1295453(+) (amiE) [Streptomyces sp. WA1-19]
MLLDVRDLQVEFHTREGVAKAVNGVSYSVDAGETLAVLGESGSGKSVTAQAVMGILDTPPGHITGGQIIFEGRDLLTLKE
DRRRKVRGAEMAMIFQDALSSLNPVLTVGEQLGEMFTVHRGMSRKDAKERAVELMDRVRIPAATERVDQYPHQFSGGMRQ
RIMIAMAMALEPKLIIADEPTTALDVTVQAQVMELLAELQREYNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHD
IYRAPAHPYTRGLLDSIPRLDQKGRELYAIKGLPPNLLAIPPGCAFHPRCPLAQPVCTTDEPPLYEVDPRRRSACHFWKE
TLHGAR

Nucleotide


Download         Length: 981 bp        

>NTDB_id=536435 LH646_RS05945 WP_226964373.1 1294473..1295453(+) (amiE) [Streptomyces sp. WA1-19]
ATGTTGCTCGACGTGCGCGACCTCCAGGTGGAGTTCCACACCAGGGAAGGCGTCGCCAAGGCCGTCAACGGCGTCTCCTA
CTCCGTCGACGCGGGGGAGACCCTGGCGGTGCTCGGCGAATCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCGGTCATGG
GCATCCTCGACACCCCGCCCGGGCACATCACGGGCGGGCAGATCATCTTCGAGGGGCGCGACCTGCTGACCCTCAAGGAG
GACCGGCGGCGCAAGGTGCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTCTCCTCCCTCAACCCGGTGCTCAC
CGTCGGCGAGCAGCTCGGCGAGATGTTCACCGTCCACCGCGGCATGTCCCGCAAGGACGCCAAGGAGCGGGCGGTCGAGC
TGATGGACCGGGTCCGCATCCCCGCCGCCACCGAACGCGTCGACCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAGCCCAAGCTGATCATCGCCGACGAGCCCACCACCGCCCTCGACGTCAC
GGTCCAGGCCCAGGTCATGGAGCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGGCTCATCCTCATCACCCACGACC
TCGGTGTCGTCGCCGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACCGCCCCCGTCCACGAC
ATCTACCGGGCCCCCGCCCACCCGTACACCCGCGGCCTGCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
GTACGCGATCAAGGGGCTGCCGCCCAACCTGCTGGCCATCCCGCCCGGCTGCGCCTTCCACCCGCGCTGCCCGCTGGCCC
AGCCGGTCTGCACCACCGACGAGCCGCCGCTCTACGAGGTCGACCCGCGCCGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCCATGGAGCCCGATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.749

99.08

0.463
  amiE Streptococcus thermophilus LMG 18311

46.13

99.08

0.457
  amiE Streptococcus thermophilus LMD-9

46.13

99.08

0.457
  oppD Streptococcus mutans UA159

46.178

96.319

0.445