Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LH646_RS05920 Genome accession   NZ_CP085039
Coordinates   1288430..1289488 (+) Length   352 a.a.
NCBI ID   WP_195730407.1    Uniprot ID   -
Organism   Streptomyces sp. WA1-19     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1283430..1294488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH646_RS05905 (LH646_05905) - 1284768..1286390 (+) 1623 WP_003950644.1 peptide ABC transporter substrate-binding protein -
  LH646_RS05910 (LH646_05910) - 1286528..1287457 (+) 930 WP_003950645.1 ABC transporter permease -
  LH646_RS05915 (LH646_05915) - 1287450..1288418 (+) 969 WP_030695779.1 ABC transporter permease -
  LH646_RS05920 (LH646_05920) amiE 1288430..1289488 (+) 1059 WP_195730407.1 ABC transporter ATP-binding protein Regulator
  LH646_RS05925 (LH646_05925) - 1289481..1290629 (+) 1149 WP_030695777.1 ABC transporter ATP-binding protein -
  LH646_RS05930 (LH646_05930) - 1290834..1292465 (+) 1632 WP_195730406.1 peptide ABC transporter substrate-binding protein -
  LH646_RS05935 (LH646_05935) - 1292557..1293480 (+) 924 WP_151168193.1 ABC transporter permease -
  LH646_RS05940 (LH646_05940) - 1293473..1294459 (+) 987 WP_030695774.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38396.34 Da        Isoelectric Point: 6.6598

>NTDB_id=536434 LH646_RS05920 WP_195730407.1 1288430..1289488(+) (amiE) [Streptomyces sp. WA1-19]
MTTTAKTATVPGPRAAADYDGHLLEVRDLHVEFHTRDGVAKAVNGVNYTVDAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPKGEVLFRGQDMLTMGKEERRKIRGQKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKEAKAKAIELMERVK
IPAAKERVNDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYARPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLTRIPSGCAFNPRCPMAQDICRT
EVPTLAPVTEQDGTDLPGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=536434 LH646_RS05920 WP_195730407.1 1288430..1289488(+) (amiE) [Streptomyces sp. WA1-19]
GTGACCACCACCGCCAAGACCGCGACGGTCCCCGGACCGCGCGCGGCCGCCGACTACGACGGCCACCTGCTCGAAGTCCG
TGACCTGCACGTCGAGTTCCACACCCGGGACGGCGTCGCCAAGGCCGTCAACGGGGTCAACTACACCGTCGACGCCGGCG
AGACCCTCGCCGTCCTCGGCGAGTCGGGCTCCGGCAAGTCCGTCACCGCCCAGGCCATCATGGGCATCCTCGACATGCCG
CCCGGCCGCATCCCCAAGGGCGAGGTGCTCTTCCGCGGCCAGGACATGCTCACCATGGGCAAGGAGGAGCGGCGGAAGAT
CCGCGGCCAGAAGATCGCCATGATCTTCCAGGACGCGCTCTCCTCGCTCAACCCGGTCCTCTCCGTGGGCTACCAGCTCG
GCGAGATGTTCCGCGTCCACCAGGGCCTCTCCAAGAAGGAGGCCAAGGCCAAGGCCATCGAGCTGATGGAGCGGGTGAAG
ATCCCGGCCGCCAAGGAGCGGGTCAACGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTCGCCCTGGAGCCCGACCTGATCATCGCCGACGAGCCCACCACGGCGCTCGACGTGACGGTGCAGGCCCAGGTCA
TGGACCTGCTCGCGGAGCTGCAGCGCGAGTACAACATGGGGCTCATCCTCATCACCCACGACCTCGGTGTCGTCGCCGAC
GTCGCCGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCGGTCCACGAGCTGTACGCCCGCCCGGC
GCACCCCTACACCCGGGGTCTGCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGGC
TGCCGCCCAACCTGACGCGTATCCCGTCCGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCGCAGGACATCTGCCGCACC
GAGGTGCCCACCCTGGCGCCCGTCACCGAGCAGGACGGTACGGACCTGCCCGGCCGCGGCAGCGCCTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.351

84.091

0.432
  amiE Streptococcus thermophilus LMG 18311

50.676

84.091

0.426
  amiE Streptococcus thermophilus LMD-9

50.676

84.091

0.426
  oppD Streptococcus mutans UA159

48.701

87.5

0.426