Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JSU12_RS15570 Genome accession   NZ_CP069677
Coordinates   3176636..3177265 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O126:H45 strain MIN10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3171636..3182265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSU12_RS15555 (JSU12_15590) helD 3171878..3173932 (-) 2055 WP_000420533.1 DNA helicase IV -
  JSU12_RS15560 (JSU12_15595) yccF 3174055..3174501 (+) 447 WP_001261231.1 YccF domain-containing protein -
  JSU12_RS15565 (JSU12_15600) yccS 3174511..3176673 (+) 2163 WP_000875023.1 YccS family putative transporter -
  JSU12_RS15570 (JSU12_15605) sxy/tfoX 3176636..3177265 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JSU12_RS15575 (JSU12_15610) sulA 3177484..3177993 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JSU12_RS15580 (JSU12_15615) ompA 3178350..3179402 (+) 1053 WP_000750419.1 porin OmpA -
  JSU12_RS15585 (JSU12_15620) matP 3179477..3179929 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JSU12_RS15590 (JSU12_15625) ycbZ 3180115..3181875 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=536426 JSU12_RS15570 WP_000839153.1 3176636..3177265(-) (sxy/tfoX) [Escherichia coli O126:H45 strain MIN10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=536426 JSU12_RS15570 WP_000839153.1 3176636..3177265(-) (sxy/tfoX) [Escherichia coli O126:H45 strain MIN10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1