Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EAB7_RS09710 Genome accession   NC_018665
Coordinates   1840500..1842302 (-) Length   600 a.a.
NCBI ID   WP_014970844.1    Uniprot ID   -
Organism   Exiguobacterium antarcticum B7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1835500..1847302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAB7_RS09685 (Eab7_1887) - 1836399..1837277 (-) 879 WP_014970839.1 RluA family pseudouridine synthase -
  EAB7_RS09690 (Eab7_1888) - 1837295..1838098 (-) 804 WP_014970840.1 NAD kinase -
  EAB7_RS09695 (Eab7_1889) - 1838109..1838759 (-) 651 WP_034774245.1 GTP pyrophosphokinase family protein -
  EAB7_RS09700 (Eab7_1890) - 1838865..1839440 (+) 576 WP_026829920.1 CYTH domain-containing protein -
  EAB7_RS09705 (Eab7_1891) - 1839532..1840323 (+) 792 WP_014970843.1 DsbA family protein -
  EAB7_RS09710 (Eab7_1892) pepF 1840500..1842302 (-) 1803 WP_014970844.1 oligoendopeptidase F Regulator
  EAB7_RS09715 (Eab7_1893) - 1842308..1843375 (-) 1068 WP_014970845.1 competence protein CoiA family protein -
  EAB7_RS09720 (Eab7_1894) cls 1843403..1844914 (-) 1512 WP_014970846.1 cardiolipin synthase -
  EAB7_RS09725 (Eab7_1895) - 1844973..1845695 (+) 723 WP_014970847.1 SDR family NAD(P)-dependent oxidoreductase -
  EAB7_RS09730 (Eab7_1896) mecA 1845761..1846387 (-) 627 WP_014970848.1 adaptor protein MecA -
  EAB7_RS09735 (Eab7_1897) spxA 1846560..1846958 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  EAB7_RS15125 (Eab7_1898) - 1847122..1847259 (-) 138 WP_012370921.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68684.26 Da        Isoelectric Point: 4.7433

>NTDB_id=53642 EAB7_RS09710 WP_014970844.1 1840500..1842302(-) (pepF) [Exiguobacterium antarcticum B7]
MAEVLTRSDVNVKETWNLESIYETNEAWEEDFESVKAMLPLLVEYKGRLAQTDTILFEGLQLRDEISRRLHKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLEVPEETIASYLDKNPDLALYRHAFDELNREREHVLSEAEEAILA
KAGEVLGQSGTTFGMLNNADMKFPKIKGEDGIETELTHGRFITFMESKDRSVREAAFKAMYSTYGQYTNTLASTLAGSIK
KDNFYAEVRHFKTARESALHGNTIPEQVYDGLIEAVHEHLPLLHRYVALRKRILGLDELHVYDMYTPLVSEVEMKVTYEE
AKQLMVDGLAPLGAEYKHILEDGLAKRWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNVNNLFTLAHEFGHSVHSYYT
RQNQPYAYGDYSIFVAEVASTTNEALLNDYLLKRVTDKNEKLYLLNNQLETFRGTLFRQTMFAEFEHQIHEAARLGQALT
PEFLTKTYYALNQTYFGDGIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTSQILEEGQPAVERYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLDEFEALLGE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=53642 EAB7_RS09710 WP_014970844.1 1840500..1842302(-) (pepF) [Exiguobacterium antarcticum B7]
ATGGCAGAAGTATTAACACGAAGTGATGTCAATGTCAAAGAAACGTGGAACTTAGAATCCATTTACGAAACGAACGAAGC
ATGGGAAGAGGACTTTGAATCGGTCAAAGCGATGTTACCGTTACTCGTCGAGTACAAAGGACGTCTTGCACAGACAGATA
CAATTTTGTTCGAAGGGTTACAATTACGAGATGAGATTTCAAGACGTCTGCATAAGCTCTATACATACGCCCACATGCGT
TACGATGAGAATACAGCGGATAGCTTTTATCAAGCGATGAATGATCGGGCTCGGACACTTGCTTCTCAAATCGGTGCCAC
GTTAGCCTTCATGACACCGGAGTTGTTAGAAGTCCCGGAAGAAACGATCGCTTCGTATCTAGACAAAAATCCTGATCTTG
CGCTCTATCGTCATGCGTTTGACGAATTGAACCGAGAACGTGAGCATGTCCTGTCGGAAGCGGAAGAAGCGATTCTCGCA
AAAGCGGGAGAAGTACTGGGTCAATCAGGAACGACGTTTGGTATGCTCAACAATGCTGACATGAAGTTCCCGAAAATCAA
GGGAGAAGATGGAATAGAGACAGAATTGACACACGGGCGATTCATCACGTTCATGGAGTCGAAGGATCGTTCCGTCCGTG
AAGCGGCATTTAAAGCGATGTATAGTACGTACGGTCAGTATACGAATACTTTGGCTTCGACGTTAGCAGGATCCATTAAA
AAAGATAACTTCTATGCAGAAGTCCGTCATTTCAAAACAGCACGCGAATCAGCGTTACACGGAAATACGATTCCTGAACA
AGTTTATGATGGTTTGATCGAAGCGGTCCATGAGCATTTGCCATTACTGCATCGTTACGTGGCCTTACGGAAACGGATTT
TAGGTCTGGATGAGTTGCATGTTTATGATATGTATACACCACTCGTCAGTGAAGTCGAGATGAAGGTCACATATGAGGAA
GCCAAACAATTGATGGTGGACGGTCTAGCCCCGTTAGGCGCTGAATATAAGCATATTCTAGAGGATGGCCTTGCGAAACG
ATGGGTCGATGTACGTGAAACACGTGGTAAACGGAGTGGCGCATACTCGTCAGGAGCTTACGATACGCAACCGTTCATCT
TGATGAACTGGCAAGACAATGTCAACAACTTGTTTACATTGGCACATGAGTTTGGTCATTCCGTTCATAGTTACTATACA
CGTCAGAACCAACCATATGCGTATGGAGACTACTCGATTTTCGTGGCAGAAGTGGCTTCTACGACAAATGAAGCACTCTT
AAATGATTATTTATTGAAACGTGTTACGGATAAAAATGAGAAACTTTATCTATTGAACAACCAATTGGAAACGTTCCGTG
GTACGCTGTTCCGTCAGACGATGTTTGCTGAATTTGAACATCAGATTCATGAAGCAGCACGTCTTGGACAAGCATTGACT
CCAGAATTCTTGACGAAAACGTATTATGCGCTCAATCAGACATATTTTGGTGATGGCATCGTACTAGACGAAGAAATTGG
TTTAGAGTGGGCGCGGATCCCGCATTTCTACTACAACTATTACGTGTACCAATATGCGACCGGCATCTCTGCCGCTGCCG
CATTGACATCACAAATTCTAGAAGAAGGACAGCCTGCTGTTGAACGTTACATCAACAATTTCCTAAAAGCAGGGTCAAGT
GATTATCCGATTGAGGTCTTAAAAGCGGCTGGAGTCGATATGACGACAAAAGCCCCAGTCGAAGCAGCTCTTCGCCAATT
TGAGCGGGTGTTAGATGAATTCGAAGCGTTACTTGGAGAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-585)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.649

98.667

0.48

Multiple sequence alignment