Detailed information NTG0536413

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LHL15_RS22275
• Genome accession: NZ_CP084900
• Coordinates: 4617253..4618278 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EC20
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4612253..4623278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LHL15_RS22250	metJ	4612690..4613007 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LHL15_RS22255	yiiX	4613191..4613799 (+)	609	WP_106495437.1	YiiX family permuted papain-like enzyme	-
LHL15_RS22260	-	4613806..4614429 (+)	624	WP_000720774.1	TIGR02117 family protein	-
LHL15_RS22265	rpmE	4614484..4614696 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LHL15_RS22270	priA	4614899..4617097 (+)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
LHL15_RS22275	cytR	4617253..4618278 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LHL15_RS22280	ftsN	4618370..4619329 (+)	960	WP_000068828.1	cell division protein FtsN	-
LHL15_RS22285	hslV	4619422..4619952 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LHL15_RS22290	hslU	4619962..4621293 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LHL15_RS22295	menA	4621360..4622286 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LHL15_RS22300	rraA	4622379..4622864 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LHL15_RS22305	zapB	4622949..4623194 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=536413 LHL15_RS22275 WP_000644904.1 4617253..4618278(+) (cytR) [Escherichia coli strain EC20]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=536413 LHL15_RS22275 WP_000644904.1 4617253..4618278(+) (cytR) [Escherichia coli strain EC20]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628