Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JSU13_RS13555 Genome accession   NZ_CP069666
Coordinates   2806809..2807438 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O89m:H9 strain MIN11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2801809..2812438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSU13_RS13540 (JSU13_13535) helD 2802051..2804105 (-) 2055 WP_001295354.1 DNA helicase IV -
  JSU13_RS13545 (JSU13_13540) yccF 2804228..2804674 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JSU13_RS13550 (JSU13_13545) yccS 2804684..2806846 (+) 2163 WP_000875058.1 YccS family putative transporter -
  JSU13_RS13555 (JSU13_13550) sxy/tfoX 2806809..2807438 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JSU13_RS13560 (JSU13_13555) sulA 2807657..2808166 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JSU13_RS13565 (JSU13_13560) ompA 2808523..2809563 (+) 1041 WP_001400178.1 porin OmpA -
  JSU13_RS13570 (JSU13_13565) matP 2809639..2810091 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JSU13_RS13575 (JSU13_13570) ycbZ 2810277..2812037 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=536404 JSU13_RS13555 WP_000839153.1 2806809..2807438(-) (sxy/tfoX) [Escherichia coli O89m:H9 strain MIN11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=536404 JSU13_RS13555 WP_000839153.1 2806809..2807438(-) (sxy/tfoX) [Escherichia coli O89m:H9 strain MIN11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1