Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LHL15_RS08530 Genome accession   NZ_CP084900
Coordinates   1812930..1814357 (-) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain EC20     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1807930..1819357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHL15_RS08500 yeeZ 1807984..1808808 (+) 825 WP_038989073.1 SDR family oxidoreductase -
  LHL15_RS08505 yeeY 1808854..1809783 (+) 930 WP_064221651.1 LysR substrate-binding domain-containing protein -
  LHL15_RS08510 yoeI 1809998..1810060 (+) 63 WP_010723108.1 membrane protein YoeI -
  LHL15_RS08515 plaP 1810050..1811408 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LHL15_RS08520 tsuA 1811588..1812646 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  LHL15_RS08525 tsuB 1812660..1812887 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LHL15_RS08530 sbcB 1812930..1814357 (-) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  LHL15_RS08535 dacD 1814566..1815732 (+) 1167 WP_001446926.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LHL15_RS08540 sbmC 1815851..1816324 (+) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  LHL15_RS08545 yeeA 1816522..1817580 (+) 1059 WP_001200895.1 FUSC family protein -
  LHL15_RS08550 tmaR 1817752..1818081 (+) 330 WP_000450409.1 DUF496 family protein -
  LHL15_RS08555 - 1818182..1818547 (-) 366 WP_001280454.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=536377 LHL15_RS08530 WP_000980605.1 1812930..1814357(-) (sbcB) [Escherichia coli strain EC20]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=536377 LHL15_RS08530 WP_000980605.1 1812930..1814357(-) (sbcB) [Escherichia coli strain EC20]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCTCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579