Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ICR96_RS23650 Genome accession   NZ_CP069606
Coordinates   4592218..4593945 (-) Length   575 a.a.
NCBI ID   WP_205661928.1    Uniprot ID   -
Organism   Priestia megaterium strain CDC 2008724142     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4587218..4598945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICR96_RS23630 (ICR96_23625) - 4587552..4587704 (+) 153 WP_013059130.1 YycC family protein -
  ICR96_RS23635 (ICR96_23630) - 4588017..4589348 (+) 1332 WP_013084983.1 peptide MFS transporter -
  ICR96_RS23640 (ICR96_23635) spo0A 4589739..4590527 (-) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  ICR96_RS23645 (ICR96_23640) spoIVB 4590755..4592035 (-) 1281 WP_016765539.1 SpoIVB peptidase -
  ICR96_RS23650 (ICR96_23645) recN 4592218..4593945 (-) 1728 WP_205661928.1 DNA repair protein RecN Machinery gene
  ICR96_RS23655 (ICR96_23650) argR 4593962..4594411 (-) 450 WP_013059136.1 transcriptional regulator ArgR -
  ICR96_RS23660 (ICR96_23655) - 4594573..4595400 (-) 828 WP_013084988.1 TlyA family RNA methyltransferase -
  ICR96_RS23665 (ICR96_23660) dxs 4595397..4597298 (-) 1902 WP_013059138.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ICR96_RS23670 (ICR96_23665) - 4597619..4598515 (-) 897 WP_095378806.1 polyprenyl synthetase family protein -
  ICR96_RS23675 (ICR96_23670) - 4598515..4598748 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64689.24 Da        Isoelectric Point: 4.8014

>NTDB_id=536131 ICR96_RS23650 WP_205661928.1 4592218..4593945(-) (recN) [Priestia megaterium strain CDC 2008724142]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISPLEKNYAEISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEELNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTVDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=536131 ICR96_RS23650 WP_205661928.1 4592218..4593945(-) (recN) [Priestia megaterium strain CDC 2008724142]
TTGTTAGCTGAATTATCCATTAAAAACTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGGAAATCGATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTACGCCACGGAACAGACAGAGCCGAAATTGAAGGACTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCCAAACAAGTCGGTTTGGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGATATCACTACAAATGGGAAAAGTATTTG
CCGCATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTTGGACAGACGTTAATTGATATACATGGACAGCACG
AGCACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCTAGGTATACATCGCTAAAAAAGCAGCTTGATCAATTAACTGAAAATGAACAGCAGAT
GGCACATCGCCTCGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACGTCGCTAAACGATGCGTACAATGCCCTGCACGGT
GAACACCAAGGTTTAGATTGGGTCGGTGTAGCAATGAATCATACGGAGGATATTTCGCCACTGGAAAAAAACTATGCCGA
AATTTCTGAGATCATTTCATCGAGCTTCTATCAGCTAGAAGACGCATCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGATGAAATTCTAGAATATGCAGCGCAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAAGAGTTAAACAGTGTAGCACAGGATTTATTAGTAGAAGCTAATAACGTTTCAGCTATTCGAAAAAAACTTG
CTCAGGAGTTAACGGACAGTATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
ATTTTATATTTCTACTAATCCTGGTGAACCTTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAAAGCATCTTCTCTAAGCATCAAGGCGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCTATTTCTGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
TCAGGTAGCTGCGATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTTC
CGTTAACTGTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

65.104

100

0.652