Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   A0K_RS22215 Genome accession   NZ_AAQW01000001
Coordinates   4740715..4741719 (-) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa PACS2     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4735715..4746719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0K_RS22200 - 4736198..4737205 (+) 1008 WP_009876909.1 TolB family protein -
  A0K_RS22205 mutS 4737331..4739898 (+) 2568 WP_003113873.1 DNA mismatch repair protein MutS -
  A0K_RS22210 fdxA 4739965..4740288 (+) 324 WP_003119354.1 ferredoxin FdxA -
  A0K_RS22215 rpoS 4740715..4741719 (-) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  A0K_RS22220 - 4741824..4742717 (-) 894 WP_003115226.1 peptidoglycan DD-metalloendopeptidase family protein -
  A0K_RS22225 - 4742763..4743398 (-) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  A0K_RS22230 surE 4743431..4744180 (-) 750 WP_004345454.1 5'/3'-nucleotidase SurE -
  A0K_RS22235 truD 4744168..4745235 (-) 1068 WP_009876911.1 tRNA pseudouridine(13) synthase TruD -
  A0K_RS22240 ispF 4745232..4745705 (-) 474 WP_003098560.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  A0K_RS22245 fghA 4745776..4746627 (-) 852 WP_009876912.1 S-formylglutathione hydrolase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=53612 A0K_RS22215 WP_003113871.1 4740715..4741719(-) (rpoS) [Pseudomonas aeruginosa PACS2]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=53612 A0K_RS22215 WP_003113871.1 4740715..4741719(-) (rpoS) [Pseudomonas aeruginosa PACS2]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653

Multiple sequence alignment