Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   A0K_RS18875 Genome accession   NZ_AAQW01000001
Coordinates   4022957..4023313 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa PACS2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4017957..4028313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0K_RS18850 - 4018340..4018972 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  A0K_RS18855 - 4019037..4019933 (-) 897 WP_009876750.1 radical SAM protein -
  A0K_RS18860 - 4020083..4020721 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  A0K_RS18865 - 4020807..4021940 (+) 1134 WP_009876751.1 aminotransferase class V-fold PLP-dependent enzyme -
  A0K_RS18870 - 4022166..4022942 (-) 777 WP_003091117.1 TatD family hydrolase -
  A0K_RS18875 pilZ 4022957..4023313 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  A0K_RS18880 - 4023347..4024333 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  A0K_RS18885 tmk 4024326..4024958 (-) 633 WP_003091125.1 dTMP kinase -
  A0K_RS18890 mltG 4024987..4026036 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  A0K_RS18895 pabC 4026042..4026857 (-) 816 WP_003113994.1 aminodeoxychorismate lyase -
  A0K_RS18900 fabF 4026857..4028101 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=53599 A0K_RS18875 WP_003091119.1 4022957..4023313(-) (pilZ) [Pseudomonas aeruginosa PACS2]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=53599 A0K_RS18875 WP_003091119.1 4022957..4023313(-) (pilZ) [Pseudomonas aeruginosa PACS2]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449

Multiple sequence alignment