Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JN756_RS28040 Genome accession   NZ_CP069594
Coordinates   6168877..6170244 (-) Length   455 a.a.
NCBI ID   WP_017848272.1    Uniprot ID   A0A1D3K4F8
Organism   Pseudomonas sp. Y39-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6163877..6175244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN756_RS28020 (JN756_27840) yjiA 6164882..6165841 (-) 960 WP_201021572.1 GTPase -
  JN756_RS28025 (JN756_27845) - 6165998..6166195 (-) 198 WP_017737420.1 YbdD/YjiX family protein -
  JN756_RS28030 (JN756_27850) - 6166211..6168277 (-) 2067 WP_057005111.1 carbon starvation CstA family protein -
  JN756_RS28035 (JN756_27855) - 6168453..6168821 (+) 369 WP_108525513.1 PilZ domain-containing protein -
  JN756_RS28040 (JN756_27860) radA 6168877..6170244 (-) 1368 WP_017848272.1 DNA repair protein RadA Machinery gene
  JN756_RS28045 (JN756_27865) - 6170280..6170828 (-) 549 WP_104904399.1 ankyrin repeat domain-containing protein -
  JN756_RS28050 (JN756_27870) katB 6170966..6172507 (-) 1542 WP_201021573.1 catalase KatB -
  JN756_RS28055 (JN756_27875) mscL 6172795..6173211 (+) 417 WP_017848275.1 large-conductance mechanosensitive channel protein MscL -
  JN756_RS28060 (JN756_27880) - 6173257..6174033 (-) 777 WP_046381980.1 ferredoxin--NADP reductase -
  JN756_RS28065 (JN756_27885) - 6174435..6175145 (+) 711 WP_046381979.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=535862 JN756_RS28040 WP_017848272.1 6168877..6170244(-) (radA) [Pseudomonas sp. Y39-6]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=535862 JN756_RS28040 WP_017848272.1 6168877..6170244(-) (radA) [Pseudomonas sp. Y39-6]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGTACCGAGTG
CGGGGCGTGGAACACCCTCACCGAAACCATGATCGAAAGCGGCGGCGCCGCGGCCCCCAGCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAGTCCCGCGTTTCTCCACCGCGTCCGGTGAGCTC
GACCGCGTGCTGGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCCGGTATCGGCAAGTCGACCAT
CCTGTTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGTTGTACGTCACCGGCGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCACGCCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACCGCGCGGATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCTCC
GGGCGGCGTGTCCCAGGTGCGTGAGAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGTCATGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGACGGCCGTTTGCGTTTGCTGCGCGCCGTGAAGAACCGCTTCGGTGCGGTGAACGAGCTGGGCGTATTCGC
CATGACCGACCGCGGGCTGAAAGAAGTCTCCAACCCCTCGGCGATTTTTCTGACCCGTGCCCAGGAAGAAGTCCCCGGTA
GTGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGACGACAGCCATTTGGCA
AACCCGCGTCGAGTGACCCTGGGCCTGGACCAGAACCGCCTGGCAATGCTGCTCGCGGTACTCCATCGGCACGGCGGCAT
CCCGACCCATGACCAGGACGTGTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCTAGCCTGCGCAACCGGCCGCTGCCCCACGACCTGCTGGTGTTCGGCGAAGTTGGCCTGTCGGGC
GAGGTGCGCCCGGTGCCCAGCGGTCAGGAGCGTTTGAAAGAAGCGGCCAAACACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGCCGGGGTTGCAGGTGATTGCAGTGACGCGGCTGGAGCAGGCGTTGGATGCACTTT
TCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(79-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D3K4F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.957

100

0.475
  radA Streptococcus pneumoniae R6

46.957

100

0.475
  radA Streptococcus pneumoniae TIGR4

46.957

100

0.475
  radA Streptococcus pneumoniae D39

46.957

100

0.475
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47