Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JN756_RS18985 Genome accession   NZ_CP069594
Coordinates   4218119..4218754 (-) Length   211 a.a.
NCBI ID   WP_046382924.1    Uniprot ID   A0A2N7YSQ7
Organism   Pseudomonas sp. Y39-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4213119..4223754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN756_RS18950 (JN756_18825) - 4213488..4214159 (+) 672 WP_057004407.1 Bax inhibitor-1/YccA family protein -
  JN756_RS18955 (JN756_18830) murB 4214234..4215253 (-) 1020 WP_017848009.1 UDP-N-acetylmuramate dehydrogenase -
  JN756_RS18960 (JN756_18835) - 4215250..4215714 (-) 465 WP_108525115.1 low molecular weight protein-tyrosine-phosphatase -
  JN756_RS18965 (JN756_18840) kdsB 4215714..4216478 (-) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JN756_RS18970 (JN756_18845) - 4216475..4216660 (-) 186 WP_003174668.1 Trm112 family protein -
  JN756_RS18975 (JN756_18850) lpxK 4216684..4217694 (-) 1011 WP_046382926.1 tetraacyldisaccharide 4'-kinase -
  JN756_RS18980 (JN756_18855) - 4217694..4218122 (-) 429 WP_046382925.1 biopolymer transporter ExbD -
  JN756_RS18985 (JN756_18860) exbB 4218119..4218754 (-) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JN756_RS18990 (JN756_18865) comA 4218864..4221077 (-) 2214 WP_201021174.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JN756_RS18995 (JN756_18870) - 4221225..4221740 (+) 516 WP_017848016.1 DUF2062 domain-containing protein -
  JN756_RS19000 (JN756_18875) - 4221744..4223114 (-) 1371 WP_046382922.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.02 Da        Isoelectric Point: 7.3613

>NTDB_id=535855 JN756_RS18985 WP_046382924.1 4218119..4218754(-) (exbB) [Pseudomonas sp. Y39-6]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=535855 JN756_RS18985 WP_046382924.1 4218119..4218754(-) (exbB) [Pseudomonas sp. Y39-6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGCGCCAGCCGTGTCACGCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAGCTGCGTGCCAATTCACCCCTGGGTGAAATTCTCGCGGCCGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATCCATGAGCTGGAGCGTTATAT
CAACGCCCTCGGCACTATCGCCGCCATGGCACCGTTGCTCGGCCTGCTGGGCACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCCCTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7YSQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853