Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6K03_RS00710 Genome accession   NZ_CP069587
Coordinates   157449..158849 (+) Length   466 a.a.
NCBI ID   WP_081526417.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain FDAARGOS_1273     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152449..163849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K03_RS00685 (I6K03_00685) - 154056..155033 (+) 978 WP_043614976.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6K03_RS00690 (I6K03_00690) - 155080..155604 (+) 525 WP_048403552.1 KdsC family phosphatase -
  I6K03_RS00695 (I6K03_00695) lptC 155601..156170 (+) 570 WP_081526418.1 LPS export ABC transporter periplasmic protein LptC -
  I6K03_RS00700 (I6K03_00700) lptA 156160..156720 (+) 561 WP_043614981.1 lipopolysaccharide transport periplasmic protein LptA -
  I6K03_RS00705 (I6K03_00705) lptB 156717..157445 (+) 729 WP_011136878.1 LPS export ABC transporter ATP-binding protein -
  I6K03_RS00710 (I6K03_00710) rpoN/rpoN1 157449..158849 (+) 1401 WP_081526417.1 RNA polymerase factor sigma-54 Machinery gene
  I6K03_RS00715 (I6K03_00715) hpf 158917..159249 (+) 333 WP_011136880.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6K03_RS00720 (I6K03_00720) ptsN 159372..159833 (+) 462 WP_043614987.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6K03_RS00725 (I6K03_00725) hprK 159826..160782 (+) 957 WP_011136882.1 HPr(Ser) kinase/phosphatase -
  I6K03_RS00730 (I6K03_00730) rapZ 160763..161605 (+) 843 WP_043615063.1 RNase adapter RapZ -
  I6K03_RS00735 (I6K03_00735) - 161658..162263 (+) 606 WP_011136884.1 flavin prenyltransferase UbiX -
  I6K03_RS00740 (I6K03_00740) - 162266..163732 (+) 1467 WP_204086550.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51461.55 Da        Isoelectric Point: 4.8629

>NTDB_id=535800 I6K03_RS00710 WP_081526417.1 157449..158849(+) (rpoN/rpoN1) [Chromobacterium violaceum strain FDAARGOS_1273]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQAEVERFLLDNPLLERGDEPRDGEAAGDGPEQQDSPAEAQEADSRDD
GAGELLDWGAGARKGDDDDFDPMLNVPCPISLREHLLTQLGELALTDRDRAVVSLLIEELDDDGYLPLGLDELAGNLPLE
LELDSDELAVGLALLQQFDPAGVGARSLAESLTLQLRRLPGDEPGHALALAIVREHLALLGGRDYARLKKLLRCDDAALR
DAQALIARLNPHPATGFGHGDVHYVIPDISVRKLRGRWTAELNRAAMPRLRVNRLYERMLADHRAGGEMSGRLQEARWLV
KNIQQRFDTILKVAEAIVERQQLFFEHGEVAMRPLILRDIAEELGLHESTVSRSTSQKYLLCSRGLFELKYFFGSSLETE
SGGECSATAIKAHIRGMIDAEDRAKPLSDSAIADALAKQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=535800 I6K03_RS00710 WP_081526417.1 157449..158849(+) (rpoN/rpoN1) [Chromobacterium violaceum strain FDAARGOS_1273]
ATGAAACAGGCCCTTCAGCTCAAGGTATCCCAGCAACTGACGCTGACGCCGCAACTGCAGCAATCGATCAAGCTGCTGCA
GCTGTCCACGCTGGATCTGCAGGCGGAGGTGGAACGCTTCCTGCTCGACAATCCGCTGCTGGAGCGCGGCGACGAGCCCC
GCGACGGCGAGGCCGCGGGCGACGGCCCCGAACAGCAGGACAGCCCGGCCGAAGCGCAGGAAGCCGATAGCCGCGACGAC
GGCGCCGGCGAGCTGCTGGACTGGGGCGCGGGCGCCCGCAAGGGGGACGACGACGACTTCGACCCCATGCTCAACGTGCC
CTGCCCCATCAGCCTGCGCGAGCACCTGCTGACCCAGCTGGGCGAGCTCGCCCTCACCGACCGCGACCGCGCGGTGGTCA
GCCTGCTGATCGAGGAGCTGGACGACGACGGCTACCTGCCGCTGGGACTGGACGAACTGGCCGGCAACCTGCCGCTGGAA
CTGGAGCTGGACAGCGACGAGCTGGCGGTGGGCCTCGCGCTGCTGCAGCAGTTCGACCCGGCCGGCGTCGGCGCCCGCTC
GCTGGCCGAATCGCTGACGCTGCAGCTGCGGCGCCTGCCGGGAGACGAGCCCGGGCACGCGCTGGCGCTGGCCATCGTCC
GCGAGCACCTGGCATTGCTGGGCGGACGCGACTACGCCAGGCTGAAAAAGCTGCTGCGCTGCGACGACGCCGCGCTGCGC
GACGCGCAGGCGCTGATCGCCAGGCTCAACCCCCACCCCGCCACCGGCTTCGGCCACGGCGACGTCCACTACGTGATCCC
CGACATCAGCGTACGCAAGCTGCGCGGCCGCTGGACCGCCGAGCTCAACCGCGCCGCGATGCCCCGCCTGCGGGTCAACC
GGCTGTACGAACGAATGCTGGCCGACCACCGCGCTGGCGGCGAAATGTCGGGCCGTCTGCAGGAGGCGCGCTGGCTGGTC
AAGAACATCCAGCAGCGATTTGACACCATACTCAAAGTGGCGGAAGCTATTGTCGAGCGTCAACAGTTGTTCTTTGAGCA
CGGCGAAGTGGCGATGCGCCCGCTGATTTTGCGGGACATCGCGGAAGAGCTGGGCCTGCACGAATCCACCGTTTCCCGAT
CCACCAGCCAGAAATACCTGCTCTGTTCGCGGGGTTTGTTCGAGCTCAAGTATTTCTTCGGCAGTTCGCTGGAAACTGAA
AGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCCCATATCCGCGGCATGATAGACGCCGAGGACCGCGCCAAGCCGCT
GTCCGACAGCGCCATCGCCGACGCGCTGGCCAAACAGGGAATTCAGGTTGCCAGACGCACCGTAGCCAAGTATCGTGAAG
CCATGCAGATTCCGGCGGTGAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(311-464)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-296)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.096

100

0.56