Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   I6J46_RS07135 Genome accession   NZ_CP069586
Coordinates   1505158..1505958 (+) Length   266 a.a.
NCBI ID   WP_181949727.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500158..1510958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS07110 (I6J46_07110) - 1501074..1502363 (+) 1290 WP_081405107.1 glycosyltransferase family 4 protein -
  I6J46_RS07115 (I6J46_07115) - 1502388..1502939 (+) 552 WP_005066176.1 phosphatase PAP2 family protein -
  I6J46_RS07120 (I6J46_07120) iscX 1503039..1503239 (+) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  I6J46_RS07125 (I6J46_07125) ndk 1503353..1503784 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  I6J46_RS07130 (I6J46_07130) rlmN 1503908..1505143 (+) 1236 WP_002115097.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6J46_RS07135 (I6J46_07135) pilF 1505158..1505958 (+) 801 WP_181949727.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  I6J46_RS07140 (I6J46_07140) - 1505949..1506740 (+) 792 WP_204085825.1 helix-turn-helix domain-containing protein -
  I6J46_RS07145 (I6J46_07145) ispG 1506762..1507877 (+) 1116 WP_002115078.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  I6J46_RS07150 (I6J46_07150) hisS 1507874..1509166 (+) 1293 WP_202724492.1 histidine--tRNA ligase -
  I6J46_RS07155 (I6J46_07155) - 1509195..1509893 (+) 699 WP_017398816.1 YfgM family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30116.35 Da        Isoelectric Point: 9.0417

>NTDB_id=535788 I6J46_RS07135 WP_181949727.1 1505158..1505958(+) (pilF) [Acinetobacter pittii strain FDAARGOS_1216]
MSIPKLKTVLCMGIAVAFLASGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
TNAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=535788 I6J46_RS07135 WP_181949727.1 1505158..1505958(+) (pilF) [Acinetobacter pittii strain FDAARGOS_1216]
TTGAGTATTCCAAAGTTAAAAACGGTCTTATGTATGGGGATTGCAGTTGCATTTCTGGCAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCAGAGAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ACTCTGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCTACTGCAAATATGATGATGGGTATTTTG
CTACAGCAAGAAGGTAGCAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAAAGAGCAATTTCATCTGAACCGGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATATCAAATGGAGCGTTATAATGATGCGGTTGAGCAATTTCGTATTG
CTGGCGCAACATTAGGTTATGACCAACGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
ACGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAG
TTACGTGCTTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

93.985

100

0.94
  pilF Acinetobacter baylyi ADP1

75.769

97.744

0.741