Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6J46_RS05955 Genome accession   NZ_CP069586
Coordinates   1252952..1253278 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247952..1258278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS05930 (I6J46_05930) hemC 1248567..1249484 (+) 918 WP_204085765.1 hydroxymethylbilane synthase -
  I6J46_RS05935 (I6J46_05935) hemD 1249488..1250255 (+) 768 WP_057076928.1 uroporphyrinogen-III synthase -
  I6J46_RS05940 (I6J46_05940) - 1250264..1251106 (+) 843 WP_046812213.1 hypothetical protein -
  I6J46_RS05945 (I6J46_05945) - 1251116..1252309 (+) 1194 WP_204085766.1 heme biosynthesis protein HemY -
  I6J46_RS05950 (I6J46_05950) - 1252317..1252757 (+) 441 WP_017385884.1 acyl-CoA thioesterase -
  I6J46_RS05955 (I6J46_05955) hns 1252952..1253278 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6J46_RS05960 (I6J46_05960) gspN 1253613..1254356 (+) 744 WP_204085767.1 type II secretion system protein N -
  I6J46_RS05965 (I6J46_05965) - 1254356..1255192 (+) 837 WP_204085768.1 type II secretion system protein N -
  I6J46_RS05970 (I6J46_05970) gspD 1255234..1257510 (+) 2277 WP_032005866.1 type II secretion system secretin GspD -
  I6J46_RS05975 (I6J46_05975) - 1257551..1258177 (+) 627 WP_069031485.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=535780 I6J46_RS05955 WP_000801427.1 1252952..1253278(+) (hns) [Acinetobacter pittii strain FDAARGOS_1216]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=535780 I6J46_RS05955 WP_000801427.1 1252952..1253278(+) (hns) [Acinetobacter pittii strain FDAARGOS_1216]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1