Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6J46_RS05795 Genome accession   NZ_CP069586
Coordinates   1220741..1222309 (-) Length   522 a.a.
NCBI ID   WP_204085753.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215741..1227309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS05780 (I6J46_05780) gpmI 1216554..1218101 (+) 1548 WP_016144102.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I6J46_RS05785 (I6J46_05785) ctpA 1218117..1219301 (+) 1185 WP_204085751.1 S41 family peptidase -
  I6J46_RS05790 (I6J46_05790) pilR 1219305..1220717 (-) 1413 WP_204085752.1 sigma-54-dependent transcriptional regulator Regulator
  I6J46_RS05795 (I6J46_05795) pilS 1220741..1222309 (-) 1569 WP_204085753.1 sensor histidine kinase Regulator
  I6J46_RS05800 (I6J46_05800) gacA 1222320..1222955 (-) 636 WP_002121174.1 response regulator -
  I6J46_RS05805 (I6J46_05805) pbpG 1223168..1224214 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6J46_RS05810 (I6J46_05810) thrC 1224321..1225460 (-) 1140 WP_002048893.1 threonine synthase -
  I6J46_RS05815 (I6J46_05815) hom 1225515..1226816 (-) 1302 WP_002121263.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59063.61 Da        Isoelectric Point: 6.2829

>NTDB_id=535778 I6J46_RS05795 WP_204085753.1 1220741..1222309(-) (pilS) [Acinetobacter pittii strain FDAARGOS_1216]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=535778 I6J46_RS05795 WP_204085753.1 1220741..1222309(-) (pilS) [Acinetobacter pittii strain FDAARGOS_1216]
ATGCAATTTCCCCTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTCTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTCAAGTTTATTGCCACTCAGGCAACAAGACAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCTATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAAGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATATTAAAGTTTGATAATTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCCGCTTTGGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGACGCGGAACAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAACTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

95.019

100

0.95