Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6J46_RS03500 Genome accession   NZ_CP069586
Coordinates   733486..734073 (-) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS_1216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 728486..739073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J46_RS03475 (I6J46_03475) - 728499..729998 (+) 1500 WP_204085586.1 PLP-dependent aminotransferase family protein -
  I6J46_RS03480 (I6J46_03480) - 730065..731507 (-) 1443 WP_017387544.1 amino acid permease -
  I6J46_RS03485 (I6J46_03485) ydcN 731813..732361 (-) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  I6J46_RS03490 (I6J46_03490) - 732430..733125 (+) 696 WP_204085587.1 AzlC family ABC transporter permease -
  I6J46_RS03495 (I6J46_03495) - 733122..733445 (+) 324 WP_204085588.1 AzlD domain-containing protein -
  I6J46_RS03500 (I6J46_03500) ssb 733486..734073 (-) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  I6J46_RS03505 (I6J46_03505) yajR 734125..735489 (-) 1365 WP_005078603.1 MFS transporter -
  I6J46_RS03510 (I6J46_03510) - 735636..736718 (-) 1083 WP_005066886.1 DUF475 domain-containing protein -
  I6J46_RS03515 (I6J46_03515) tenA 736981..737655 (+) 675 WP_204085589.1 thiaminase II -
  I6J46_RS03520 (I6J46_03520) - 737722..738093 (+) 372 WP_204085590.1 MerR family transcriptional regulator -
  I6J46_RS03525 (I6J46_03525) - 738197..739003 (+) 807 WP_204085591.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=535771 I6J46_RS03500 WP_005066890.1 733486..734073(-) (ssb) [Acinetobacter pittii strain FDAARGOS_1216]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=535771 I6J46_RS03500 WP_005066890.1 733486..734073(-) (ssb) [Acinetobacter pittii strain FDAARGOS_1216]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385