Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6J34_RS12930 Genome accession   NZ_CP069582
Coordinates   2577153..2577446 (+) Length   97 a.a.
NCBI ID   WP_235893303.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain FDAARGOS_1204     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2572153..2582446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J34_RS12900 (I6J34_12900) - 2572816..2573358 (+) 543 WP_046099267.1 5-formyltetrahydrofolate cyclo-ligase -
  I6J34_RS12905 (I6J34_12905) - 2573375..2574835 (+) 1461 WP_046099268.1 rhomboid family protein -
  I6J34_RS12910 (I6J34_12910) - 2574816..2575016 (+) 201 WP_015900419.1 YqgQ family protein -
  I6J34_RS12915 (I6J34_12915) - 2575016..2576002 (+) 987 WP_103211985.1 ROK family glucokinase -
  I6J34_RS12920 (I6J34_12920) - 2576002..2576331 (+) 330 WP_015900417.1 MTH1187 family thiamine-binding protein -
  I6J34_RS12925 (I6J34_12925) - 2576331..2576954 (+) 624 WP_015900416.1 MBL fold metallo-hydrolase -
  I6J34_RS12930 (I6J34_12930) comGA 2577153..2577446 (+) 294 WP_235893303.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  I6J34_RS12935 (I6J34_12935) - 2577911..2579800 (+) 1890 WP_115359460.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  I6J34_RS12940 (I6J34_12940) - 2580507..2581199 (-) 693 WP_115359461.1 hypothetical protein -
  I6J34_RS12945 (I6J34_12945) - 2581183..2582361 (-) 1179 WP_115359462.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11183.06 Da        Isoelectric Point: 9.8863

>NTDB_id=535725 I6J34_RS12930 WP_235893303.1 2577153..2577446(+) (comGA) [Staphylococcus carnosus strain FDAARGOS_1204]
MEILTYLKLLTFMKFQAVLDVSNYHQAQSGQTTFKHQKLYNLRVSTLPLSLGIESCVIRLSPQYFYQDTARDGPKHFYHL
MNKKQGLILFTGPTGVL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=535725 I6J34_RS12930 WP_235893303.1 2577153..2577446(+) (comGA) [Staphylococcus carnosus strain FDAARGOS_1204]
ATCGAAATTCTGACTTATTTAAAGTTACTTACGTTTATGAAATTTCAAGCAGTGCTCGATGTATCTAATTATCATCAAGC
ACAAAGTGGTCAGACAACTTTCAAGCATCAAAAACTATATAATTTACGTGTTTCTACTTTACCGTTATCCTTAGGGATTG
AGAGTTGTGTAATACGACTTTCACCCCAGTATTTTTATCAAGATACCGCTCGTGATGGTCCTAAACACTTCTATCATTTA
ATGAATAAAAAGCAAGGACTTATTTTATTCACGGGACCAACCGGGGTATTATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

61.111

92.784

0.567
  comGA Staphylococcus aureus N315

61.111

92.784

0.567
  pilB Glaesserella parasuis strain SC1401

38.776

100

0.392