Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O3K_RS16645 Genome accession   NC_018658
Coordinates   3362066..3362695 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O104:H4 str. 2011C-3493     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357066..3367695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3K_RS16630 (O3K_16530) helD 3357308..3359362 (-) 2055 WP_000420536.1 DNA helicase IV -
  O3K_RS16635 (O3K_16535) yccF 3359485..3359931 (+) 447 WP_001261231.1 YccF domain-containing protein -
  O3K_RS16640 (O3K_16540) yccS 3359941..3362103 (+) 2163 WP_000875044.1 YccS family putative transporter -
  O3K_RS16645 (O3K_16545) sxy/tfoX 3362066..3362695 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O3K_RS16650 (O3K_16550) sulA 3362914..3363423 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  O3K_RS16655 (O3K_16555) ompA 3363780..3364820 (+) 1041 WP_000750416.1 porin OmpA -
  O3K_RS16660 (O3K_16560) matP 3364896..3365348 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O3K_RS16665 (O3K_16565) ycbZ 3365534..3367294 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=53572 O3K_RS16645 WP_000839153.1 3362066..3362695(-) (sxy/tfoX) [Escherichia coli O104:H4 str. 2011C-3493]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=53572 O3K_RS16645 WP_000839153.1 3362066..3362695(-) (sxy/tfoX) [Escherichia coli O104:H4 str. 2011C-3493]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment