Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   I6J34_RS06695 Genome accession   NZ_CP069582
Coordinates   1302305..1303654 (-) Length   449 a.a.
NCBI ID   WP_103211648.1    Uniprot ID   -
Organism   Staphylococcus carnosus strain FDAARGOS_1204     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1297305..1308654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J34_RS13600 - 1297587..1297758 (+) 172 Protein_1287 restriction endonuclease subunit S -
  I6J34_RS06660 (I6J34_06660) - 1297911..1298324 (+) 414 WP_204111547.1 restriction endonuclease subunit S -
  I6J34_RS06665 (I6J34_06665) - 1298375..1298623 (+) 249 WP_046099796.1 hypothetical protein -
  I6J34_RS06670 (I6J34_06670) - 1298688..1298909 (-) 222 WP_046099797.1 hypothetical protein -
  I6J34_RS06675 (I6J34_06675) - 1298924..1299424 (-) 501 WP_046099798.1 DUF1643 domain-containing protein -
  I6J34_RS06680 (I6J34_06680) - 1299438..1299749 (-) 312 WP_103211969.1 DUF960 family protein -
  I6J34_RS06685 (I6J34_06685) - 1299845..1300183 (-) 339 WP_115359440.1 SAUGI family uracil-DNA glycosylase inhibitor -
  I6J34_RS06690 (I6J34_06690) ccrB 1300658..1302283 (-) 1626 WP_103211647.1 cassette chromosome recombinase CcrB Machinery gene
  I6J34_RS06695 (I6J34_06695) ccrA 1302305..1303654 (-) 1350 WP_103211648.1 cassette chromosome recombinase CcrA Machinery gene
  I6J34_RS06700 (I6J34_06700) - 1303832..1304089 (-) 258 WP_011302040.1 hypothetical protein -
  I6J34_RS06705 (I6J34_06705) cch1 1304154..1305944 (-) 1791 WP_046099802.1 cassette chromosome replicative helicase -
  I6J34_RS06710 (I6J34_06710) ssb 1305944..1306237 (-) 294 WP_046099803.1 cassette chromosome ssDNA-binding protein -
  I6J34_RS06715 (I6J34_06715) - 1306410..1307921 (-) 1512 WP_115359441.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52357.94 Da        Isoelectric Point: 9.8832

>NTDB_id=535711 I6J34_RS06695 WP_103211648.1 1302305..1303654(-) (ccrA) [Staphylococcus carnosus strain FDAARGOS_1204]
MKQAMGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKAKQGKLITTHAPFGYHYH
NGTFTIDTVKAPTVKAVFNYYLQGYGYKKIAQYLEADDKFINRKPYQVRNIILNPNYCGRIINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKHKPSENQLKQKIKCPYCHSTLTNMTVRKTDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAI
CQDFFQNQQLYSKINHTIQQRLKRQRDVETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKTLAGIYFKNEPLNIVNQTTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=535711 I6J34_RS06695 WP_103211648.1 1302305..1303654(-) (ccrA) [Staphylococcus carnosus strain FDAARGOS_1204]
ATGAAACAAGCAATGGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ACCAACAAATCACCGAACTAATTCAACAAGGACAATGTGACGTATTATGTTGCTATCGTCTAAATCGACTTCATCGTAAT
TTGAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGTCTTAAAGAAAAAGCGAAACAAGGTAAACTGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAATTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTATTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACATAAGCCGTCAGAAAACCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAAACAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGATT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TGTAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAACAAAACCCT
TGCGGGGATCTATTTCAAAAATGAACCTCTAAACATTGTCAATCAAACTACGCAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(170-249)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

93.987

100

0.94
  ccrA Staphylococcus aureus N315

75.056

100

0.751