Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LB315_RS03870 Genome accession   NZ_CP084892
Coordinates   802009..803091 (+) Length   360 a.a.
NCBI ID   WP_115289279.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1956/ST4614-MSSA     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 797009..808091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB315_RS03850 (LB315_03855) - 797379..798449 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  LB315_RS03855 (LB315_03860) - 798767..799822 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  LB315_RS03860 (LB315_03865) - 799994..800635 (-) 642 WP_000192947.1 YigZ family protein -
  LB315_RS03865 (LB315_03870) fakB1 800779..801645 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  LB315_RS03870 (LB315_03875) comFA 802009..803091 (+) 1083 WP_115289279.1 DEAD/DEAH box helicase Machinery gene
  LB315_RS03875 (LB315_03880) - 803084..803758 (+) 675 WP_001057968.1 ComF family protein -
  LB315_RS03880 (LB315_03885) raiA 803819..804391 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  LB315_RS03885 (LB315_03890) secA 804805..807336 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  LB315_RS03890 (LB315_03895) - 807378..807476 (+) 99 Protein_756 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42006.48 Da        Isoelectric Point: 9.6568

>NTDB_id=535702 LB315_RS03870 WP_115289279.1 802009..803091(+) (comFA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEYIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=535702 LB315_RS03870 WP_115289279.1 802009..803091(+) (comFA) [Staphylococcus aureus strain CC1956/ST4614-MSSA]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAATATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369